barSeed - Barley Seed Development Database

Probe CUST_3185_PI390587928

Source Contig U35_22940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3185_PI390587928	Hv_44K_v2	GTGGTATGGAACGTGCGGCTAGCATTGAAAAAGATTTGGAGTGGTTCAGAGAACAAGCAA	529	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.543	0.757	1.570	2.375	0.777	0.985
Raw	116.092	251.652	463.330	1151.376	129.565	175.813

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249626.1	1370	2e-24	556 - 615	100	60 / 60	plus	ABC17002
MLOC	MLOC_2590.2	1215	2e-24	22 - 81	100	60 / 60	plus	None
MLOC	MLOC_2590.1	796	2e-24	214 - 273	100	60 / 60	plus	None
JLOC1	JLOC1_1542.1	340	8e-25	22 - 81	100	60 / 60	plus
Harvest21	ABC20762	701	3e-25	530 - 589	100	60 / 60	plus
Harvest35	U35_22940	701	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_22940 701 Hv_44K_v2
GCCCAAGTCCAGTGGATAACCATGCCGCTCGCCATTGCCGTCCCCTCGGCGGCGGCGCCG
CTCCGGCGACCACATCACTTCCGCTTTCTCCAGCCATCAAGAAAGCTTAGCCTATCCAGA
ACACGCTGCGCCTCTTCGCTCCCGGCAGAGACGCAGCCAGCTCCTCCGCAACCCCGGCGG
TACCCGAGGCAGTACCCAGGCGAGGCGGTGGGCGTTGCCGAGGAGATACGGTTCGTTGCC
ATGCGCCTCCGCAACACTAAGCGCAGTACTCGTAAGGGAAATAATAGGGCTGACGGAGTC
GAGGAAGACGATGAATCGGAGGAGGAGGTGGAGGACAACGAGGAGATGGACGAGGAGGGC
AACGACGAAGTGAAGGAGGAGGAGGGGGAGGACAACCATGAAGTGGAGGAGTGGATGCCC
AGCATGGAAGGGTTCGTGAGGTACCTTGTGGATAGCAAGCTTGTCTTCGACACCGTCGAG
CGGATCATCGCCGGGTCTACGGACGTCGCCTATGTTTACTTCAGGAGAAGTGGTATGGAA
CGTGCGGCTAGCATTGAAAAAGATTTGGAGTGGTTCAGAGAACAAGCAATTGAAATTCCA
GAGCCAAGTACTTTTGGATCAACATATGCAGCTTATCTGTCTGAATTGGCTGGGAGGAGT
GCCCCGGCCTTCCTTTCCCACTATTACAATTTTTTATTTTT

Homology of Contig U35_22940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g60540.1	304	1e-76
Arabidopsis v10	None