barSeed - Barley Seed Development Database

Probe CUST_31853_PI390587928

Source Contig U35_27639

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31853_PI390587928	Hv_44K_v2	CGTCGTCGATGCAGGCCACCCCCGTGTACAACAGCCCCAACGAGTCCCCCTCGCACCCCT	294	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.402	0.566	1.702	1.508	1.092	1.056
Raw	32.330	64.477	183.829	244.379	66.656	70.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43433.2	668	2e-23	218 - 275	100	58 / 58	minus	None
MLOC	MLOC_43433.1	581	2e-23	223 - 280	100	58 / 58	minus	None
JLOC1	JLOC1_28082.1	574	1e-23	302 - 359	100	58 / 58	plus
Harvest21	ABC22376	353	1e-24	295 - 353	100	59 / 59	plus
Harvest35	U35_27639	354	3e-25	295 - 354	100	60 / 60	plus

Contig Sequence (354 bp)

>U35_27639 354 Hv_44K_v2
CCTACGCCTGCACCTCCACCTCCTCCCCGCCGCCCCACCACCACCTTCACTCCACCCGCC
GCCGCCGCTCCTTCTTCTTCTTCCTCCTCTTCCGCCCGCCTTCTCCCGCCGCAGGACTCC
GGCCTTCCTCGGTGGGCGCAGCGGCGGAGATGATGCACGGCAAGTCGGACTCGGACATCA
CGAGCCTGGCGGCGTCGTCGCCGCCGCGGTCGCCGAAGCGGGCGGGCGGCTACTACGTGC
AGAGCCCGTCGCGGGACTCGGCGCACGACGGCGGGGGCGCCGGCGGGTACAAGTCGTCGT
CGATGCAGGCCACCCCCGTGTACAACAGCCCCAACGAGTCCCCCTCGCACCCCT

Homology of Contig U35_27639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None