barSeed - Barley Seed Development Database

Probe CUST_31841_PI390587928

Source Contig U35_15661

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31841_PI390587928	Hv_44K_v2	CTTCTTCCGTTTCGTTATTTCGTTTGTTCTTCTTTTTTCCACGGCCACTTTTGCGTGTAT	744	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76930.2	2110	2e-24	2001 - 2060	100	60 / 60	plus	ABC03965 ABC03966
MLOC	MLOC_76930.1	2178	2e-24	2022 - 2081	100	60 / 60	plus	ABC03965 ABC03966
JLOC1	JLOC1_51306.2	1940	8e-25	1613 - 1672	100	60 / 60	plus
JLOC1	JLOC1_51306.1	2247	8e-25	1920 - 1979	100	60 / 60	plus
Harvest21	ABC03965	858	3e-25	55 - 114	100	60 / 60	minus	ABC03965
Harvest35	U35_15661	858	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_15661 858 Hv_44K_v2
GGGTCCATAACCATTCCTCCCTATGCCAACCCCCAGAAGATGCAGGCTCACCTCATCTCC
CCCGGCACTCCCCGGTCCATCTTCGCCTACTTCCGCGGCCTCTTCTACGACATGGGCAAC
GACCCCGAGGGCGGCTACTACGCCAGGGGCGCGCGGGCGTCGGTGTGGGAGAACTTCAAG
GACAACCCGCTGTTCGACATGTCGTCGGAGCACCCGTCGACGTACTACGAGGACATGCAG
CGGGCCATCTTCTGCCTGTGCCCGCTGGGGTGGGCGCCGTGGAGCCCGCGGCTGGTGGAG
GCGGTGGTGTTCGGGTGCATCCCGGTGATCATCGCGGACGACATCGTGCTGCCCTTCGCG
GACGCCATACCATGGGAGCAGATCAGCGTGTTCGTGGCCGAGGCGGACGTGCCGCGGCTC
GACTCCATCCTGGCGTCCGTGGCCCCCGAGGACGTGCTCCGGAAGCAGCGCCTGCTGGCC
AGCCCGGCCATGAAGCAGGCCGTGTTCTTCCACCAGCCGGCCAGGCCCGGCGACGCCTTC
GACCAGGTGCTCAACGGGCTCGCCCGCAAGCTGCCGCACCCGGACGGCGCCTTCCTCAAG
CCCGGCCAGAAGGTGCTCGACTGGAACGCCGGACTCGACAGCGACCTCAAGCCGTGGTAG
CCGTGTGTGTAGATCGTCGGAGCGCTTTGCATAGTCTCGTGTACATTTTTGTTCTTCGGA
AGACCTCACGCCCTGTTCCTTTTTCTTCTTCCGTTTCGTTATTTCGTTTGTTCTTCTTTT
TTCCACGGCCACTTTTGCGTGTATGCAGCAGCAGCAGCAGCAGCGATAGAGATTTGATGA
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_15661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70180.2	390	1e-140	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g59380.1	424	3e-150
Arabidopsis v10	AT5G61840.1	415	5e-130	\| Symbols: GUT1 \| Exostosin family protein \| chr5:24839365-24841703 REVERSE LENGTH=415