barSeed - Barley Seed Development Database

Probe CUST_31834_PI390587928

Source Contig U35_15668

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31834_PI390587928	Hv_44K_v2	TCTGGCTGGCCGCTTGGCTAACATTGTATGATCGTTGCCCCTTAGTATTTCATTTAGTTC	2331	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.705	1.803	1.185	0.824	0.343	0.355
Raw	244.300	395.142	232.567	250.514	36.282	41.047

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32648.1	1808	8e-25	1617 - 1676	100	60 / 60	plus
Harvest21	ABC05489	2411	3e-25	2326 - 2385	100	60 / 60	plus	ABC05489
Harvest35	U35_15668	2417	3e-25	2332 - 2391	100	60 / 60	plus

Contig Sequence (2417 bp)

>U35_15668 2417 Hv_44K_v2
GGGCCTGCAGGCTTTCCACTGGTAGGAAGGAACCAGCATCAACTGCAGCAGGACCGACCG
GGACGCGGTCGGGGATGGCGAACGCGTTGTCCATCTCGCGGAGCCTCCGGCGATCCCTCG
CCCCTGACGCCATCTACCGCCTCCTCCTCCAGCGGTCGCGGGCGTTCGTGACGGCTGAGT
GCCATCGCCCCGTCGTCCTCCACAAGCGCGGCCCCGACATCCTACACGACCCATGGTTCA
ACCGGGGAACGGCGTTCTCGATGACGGAGAGGGACCGGCTCGGCCTCCGCGGCCTGCTCC
CGCCCAGTGTCGTTTCCTCGCAGCAGCAGATCGACCGATTCATGGGTGATCTTAAACGGC
TGGAGCAAAATGCCAGAGACGGGCCGTCTGATACTTACCAACTGGCGAAATGGCGTATTC
TTAACAGACTGCATGACAGAAACGAAACGATGTACTACAAGGTCTTAATAGATAATATTG
AGGAGTATGCGCCTATTGTTTACACACCGACTGTTGGCGCTGTTTGCCAAAACTACAGTG
GCTTGTTTAGACGGCCTCGAGGAATGTATTTTAGTGCAGAGGATCGTGGTGAAATGATGT
CCATGGTGTACAACTGGCCAGCTGATCAGGTCGACATGATAGTGGTGACTGATGGAAGCA
GGATATTGGGCCTTGGTGATCTAGGGGTGCAAGGTATTGGCATTGCTATAGGGAAGCTGG
ATTTATATGTTGCTGCTGCTGGAATAAATCCCCAGAGGGTTCTTCCAGTTATGATTGATG
TGGGAACTAACAATGAGAAACTCCTCAAGGATCCTCTTTATCTTGGGCTACAAGAACACC
GTCTTGAGGGAGAAGAATATGTTGAAATTATTGATGAATTCATGGAAGCTGTTTTCTCTC
GTTGGCCCAATGTGATTGTACAGTTTGAAGATTTCCAAAGTAAATGGGCCTTCAGGTTGT
TGCAGCGTTACAGGAAGACTTATCGTATGTTTAATGATGATGTGCAGGGAACTGCTGGTG
TTGCAATAGCTGGTCTTCTAGGAGCTGTAAGGGCACAAGGAAGGCCAATGATAGACTTTC
CAAAGCAAAAGATTGTTGTCGCAGGTGCTGGCAGTGCTGGGATTGGTGTTGTGAATGCTG
CAAGCAGGACCATGGCAAGGATGCTGGGAAACAACGAGGTTGCTTTTGAGAGTGCTAGGA
GTCAATTCTGGATAGTCGATGCTCATGGCTTAATAACAGAGGAACGTGTAGAAATCGACC
CAGATGCACTTCCCTTTGCTAGGAGAAAGAGTGAGCTAACTCACCAAGGCCTAAATGAGG
GCGCAAGCTTGATTGAAGTGGTTAAAAAGGTGAAGCCTGATGTCATACTTGGACTATCTG
CTGTTGGTGGTTTGTTCTCAAAGGAGGTTTTGGAAGCACTAAAAGATTCATCCTCTTCCA
GACCAGCAATTTTTGCGATGTCAAATCCAACTAAGAATGCTGAATGTACACCTGAAGAAG
CCTTCTCAATTATTGGTGAAAAGGTCATATTTTCCAGTGGAAGCCCATTTGACGATGTGG
ATCTTGGTGATGGAAAGATCGGCCACTCTAATCAAGGGAATAACATGTATCTCTTTCCTG
GAATAGGACTTGGAACCCTGTTATCTGGTGCACGGATTGTCTCTGATGGAATGCTTCAGG
CGGCAGCAGAGCGCTTGGCTTCGTACATGAAAGAGGAGGAGGTTCTCCAAGGGATAATTT
ACCCTCCAACCTCCAGAATACGTGACATCACTAAGGAGGTGGCGGCAGCAGTGGTGAGGG
AAGCTGTTGCAGAGGACCTAGCTGAGGGATACCGTGACATGGATGCACGTGAGCTTGCAA
GACTAAGCGAGGAAGAAACAGTTGATTATGTCAAGAACAACATGTGGAATCCAGTTTATC
CAACAGTAGTGTACAAGAAAGACTAGAATTCTACTCATGCTGTAAAATACATGTTCATTC
ATCATGCGCAATTTTCCTTAGGCTATTCTTTCGATCTTTGGAAATATAGCCACCTCCGAT
ATGAGTATGGAGTCTCGATTGTTTAATGTGATCGTCACGTGATAGAACACGAGACTGACC
CCAGTTTTTAGTTGTCTAATGCTGTGAGAGGTGCACTAGGTAGTGCGAGATAGGCTCCCA
GCTCCCTGTCTGTCGCATTTGAAGTTGAGGTACTTGCAATAATAACTGGGACTTGCATTC
CAGTTTTCTCCAAAAAAAAAAAAAAAAATCTTGTGTCGTGTGTGTTTCGAACTAAGATTA
ACTAACTGAAGCAGCAACGTGACCAGATTTCAGGGGCGACAGTTCTGGCTGTCTGGCTGG
CCGCTTGGCTAACATTGTATGATCGTTGCCCCTTAGTATTTCATTTAGTTCTTTTATTAT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_15668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g31380.1	623	protein\|NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g27000.1	621
Arabidopsis v10	AT2G13560.1	623	\| Symbols: NAD-ME1 \| NAD-dependent malic enzyme 1 \| chr2:5650089-5655103 FORWARD LENGTH=623