barSeed - Barley Seed Development Database

Probe CUST_31832_PI390587928

Source Contig U35_15669

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31832_PI390587928	Hv_44K_v2	AAGAAACAGTTGATTATGTCAAGAACAACATGTGGAATCCAGTTTATCCAACAGTAGTGT	1309	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.954	1.367	1.575	1.557	0.641	0.712
Raw	787.317	1820.032	1757.027	2823.120	392.202	478.503

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360961	2137	2e-24	1851 - 1910	100	60 / 60	plus	ABC05489 ABC40143
MLOC	MLOC_51144.1	1891	2e-24	1402 - 1461	100	60 / 60	plus	ABC05489 ABC40143
JLOC1	JLOC1_32648.1	1808	8e-25	1164 - 1223	100	60 / 60	plus
Harvest21	ABC40143	392	3e-25	239 - 298	100	60 / 60	plus	ABC40143
Harvest21	ABC05489	2411	3e-25	1873 - 1932	100	60 / 60	plus	ABC05489
Harvest35	U35_15669	1395	3e-25	1310 - 1369	100	60 / 60	plus
Harvest35	U35_15668	2417	3e-25	1873 - 1932	100	60 / 60	plus

Contig Sequence (1395 bp)

>U35_15669 1395 Hv_44K_v2
CTCCTCCCTCTCTCCCACCTCCCAGATCCTGCACGCCATCCATCAGCTTGATACGCACAC
ACCCATCCGCAACAAGAAAAAGAAAGGGAAGCCATGGCGCCCAGGACGTCCGACAAGACG
GCGACGCCGCCCGCTGCCGCGGTCGCCGCGACCGGCCTGGCGCTCGGCGTCGGCGGCGGC
GCCAACGGTGGAGGCGTCGGCCCGCACTACAGGGGCGTGAGGAAGCGCCCGTGGGGCCGG
TACGCGGCGGAGATCCGCGACCCGGCCAAGAAGAGCCGGGTGTGGCTCGGCACGTACGAC
ACGGCCGAGGAGGCCGCGCGGGCCTACGACGCCGCCGCGCGCGAGTACCGCGGCAACAAG
GCCAAGACCAACTTCCCCTTCGCCTCCGCGCCGCCCGCCGCAGCCCTCACCGGCGACGGC
AGCCGGAGCAGCAACAGCAGCACCGTGGACTCCTTCGGCGGCGACGTGCAGGCACCCATG
CAGGCCATGCCGCTCCCTCCCTCCGTCGAGCTCGACCTGTTCCACCGCGCGGCCAGCACC
GCCGGGGCCGGCATGCGGTTCCCTTTCAGCGGCTACCCCGTTTCGCACCCGTACTACTTC
TTCGGACAGGCCGCGGCGGCCGCCGCCGCCGGCTGCCACATGTACAACCTGGCCCCGAAG
GTCACCGTGGCGTCCGTGTCCCCGAGCGACTCCGACTCCTCGTCGATCGTGGATCTGGCG
CCGTCGCCGCCCGCAAGGAAGCCCGTCCCTTTTGATCTTGACCTGAACTGCCCGCCGCCG
GCCGAGCACTGATCGGTGGCCCGAGTTTATTTAGATGATATGACTGCTAGTTTTCTTTCG
TCTCCTTTTTCTTTTTCTCTCCCTAGAAGGAAGAAAAAATTCCATGTACCTCCATGATGC
TTAGTTGAGGCCCCCTTGCATAACAACGGCAGGGGCAGATCTGTAAATACGGTTTCTTTT
TTTCGCCGGAGAGTAGTTGGCTTGAGCAAGAGAGCCAGAGAGATGGATGTATTGTCGCCC
AAGACAGATCCTGCCGGCGTTGTTATGGACCGAATTATAATGAGTTACTTCTACTTTGAC
AAAAAAAAAAAAAAAAAAAAAAAAAAANNNNAGCTTGTACACCTGCCCGGGCGGCCGAGG
TACTTGAAAGAGGAGGAGGTTCTCCAAGGGATAATTTACCCTCCAACCTCCAGAATACGT
GACATCACTAAGGAGGTGGCGGCAGCAGTGGTGAGGGAAGCTGTTGCAGAGGACCTAGCT
GAGGGATACCGTGACATGGATGCACGTGAGCTTGCAAGACTAAGCGAGGAAGAAACAGTT
GATTATGTCAAGAACAACATGTGGAATCCAGTTTATCCAACAGTAGTGTACCTGCCCGGG
CGGCCGCTCGAAAGC

Homology of Contig U35_15669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41780.1	237	5e-61	protein\|AP2 domain containing protein, expressed
Brachypodium v1_2	Bradi2g21060.1	237	3e-56
Arabidopsis v10	None