barSeed - Barley Seed Development Database

Probe CUST_31810_PI390587928

Source Contig U35_15670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31810_PI390587928	Hv_44K_v2	TTCAATAAAATCCAAGGTTTCTAACCGGCCTTGCAACAATGGCAATAGCACAGACGACCA	72	GeneList: plum2 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.014	0.201	1.413	2.378	1.174	1.356
Raw	24.731	669.468	4309.847	10339.210	2064.724	2549.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55908.1	1241	2e-24	393 - 452	100	60 / 60	plus	ABC03747
JLOC1	JLOC1_36103.1	1061	8e-25	205 - 264	100	60 / 60	plus
Harvest21	ABC03749	626	3e-25	44 - 103	100	60 / 60	plus
Harvest21	ABC03748	800	3e-25	46 - 105	100	60 / 60	plus
Harvest21	ABC03747	802	3e-25	42 - 101	100	60 / 60	plus	ABC03747
Harvest35	U35_15670	770	3e-25	73 - 132	100	60 / 60	plus

Contig Sequence (770 bp)

>U35_15670 770 Hv_44K_v2
GGGGATCCATCAAAGCGCACATCCATTTCAGGCTTAGGCATTGCTTACACACTTATCCTC
ACCACTCATACATTCAATAAAATCCAAGGTTTCTAACCGGCCTTGCAACAATGGCAATAG
CACAGACGACCACCATCTTCTTCTCCGCCATCATCATCGTGCTCTTTTCCTCATCAATTG
TTGCTCATACTAGCGGTGACGTAGGTGGCATGCCAAAAGCAACCGATTTCATGACAGCAG
CGTGCAAGAACGCTTCAGCCAACTTCGACGAAGATATCCACATTACCGAAAAATTCTGTG
TCTCGACCCTTCGGGCGGACAACCGGAGCCACAAGGCTAAGGACCTTCGTGACCTGGCAC
TCATCGGCGTAGACATCCTCAAAGCACGTGTCGTCACAGCCAATGGTAAGGTCCAAGAAA
TGTTGCACGATGCCAAAAAAGGCACATCGATGGCGCGCCACCTCACTGTCTGCAAGCTAG
TGTATGAAGCAACAGTTACCTTCACGAACGTCTGCACTACGTTGCTGAAGGACTACCGTG
GCCCTAACGGCGGTGACAACGATGGACCGGCATCTGATGACCTCCCTGAATGTGTAGAGC
ATGTGAACACCCTCATCGATTACTGTGGGTATGATATTCTTCACGTGTCCGGGCTTCATG
CGTTGTTCAACGAAAATCGTGAGATGAGTAGGCTGGCTTACCTCAACATTGCCTTGCTAG
GACCATATAGACACAACAATTCATAATATGTATTTTAGCCTGAGTGGTGT

Homology of Contig U35_15670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None