barSeed - Barley Seed Development Database

Probe CUST_31809_PI390587928

Source Contig U35_15671

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31809_PI390587928	Hv_44K_v2	GACCATATAGACACAACAATTCATAATATGTATTTTAGCCTGAGTGGTGTATGTTGTGTC	601	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.023	0.347	1.458	2.122	1.088	1.398
Raw	300.085	8418.770	30118.400	60815.200	12937.053	17736.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55908.1	1241	2e-24	1041 - 1100	100	60 / 60	plus	ABC03747
JLOC1	JLOC1_36103.1	1061	8e-25	853 - 912	100	60 / 60	plus
Harvest21	ABC03748	800	3e-25	694 - 753	100	60 / 60	plus
Harvest21	ABC03747	802	3e-25	690 - 749	100	60 / 60	plus	ABC03747
Harvest35	U35_15671	741	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_15671 741 Hv_44K_v2
GCACAGACGACCACCATCTTCTTCTCCGCCATCATCATCGTGCTCTTTTCCTCATCAATT
GTTGCTCATACTAGCGGTGACGTAGGTGGCATGCCAAAAGCAACCGATTTCATGACAGCA
GCGTGCAAGAACGCTTCAGCCAACTTCGACGAAGATATCCACATTACCGAAAAATTCTGT
GTCTCGACCCTTCGGGCGGACAACCGGAGCCACAAGGCTAAGGACCTTCGTGACCTGGCA
CTCATCGGCGTAGACATCCTCAAAGCACGTGTCGTCACAGCCAATGGTAAGGTCCAAGAA
ATGTTGCACGATGCCAAAAAAGGCACATCGATGGCGCGCCACCTCACTGTCTGCAAGCTA
GTGTATGAAGCAACAGTTACCTTCACGAACGTCTGCACTACGTTGCTGAAGGACTACCGT
GGCCCTAACGGCGGTGACAACGATGGACCGGCATCTGATGACCTCCCTGAATGTGTAGAG
CATGTGAACACCCTCATCGATTACTGTGGGTATGATATTCTTCACGTGTCCGGGCTTCAT
GCGTTGTTCAACGAAAATCGTGAGATGAGTAGGCTGGCTTACCTCAACATTGCCTTGCTA
GGACCATATAGACACAACAATTCATAATATGTATTTTAGCCTGAGTGGTGTATGTTGTGT
CATTTGAATAATAGTAATGAGAGATTGCTACAAAAAAAAAAAAAAAAATAACTATTTCTC
CACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None