barSeed - Barley Seed Development Database

Probe CUST_31793_PI390587928

Source Contig U35_18623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31793_PI390587928	Hv_44K_v2	TTAGTACTTGTCCAATGTCATGTTCCACTTCCATTCAAACTGAAAATTATTAGTTGCCTC	1527	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.401	0.460	0.895	1.772	1.136	1.288
Raw	242.218	441.960	746.689	2357.846	517.729	637.114

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15977.1	1843	3e-21	1770 - 1829	97	58 / 60	plus	ABC09810
JLOC1	JLOC1_10986.2	1314	2e-21	1201 - 1260	97	58 / 60	plus
JLOC1	JLOC1_10986.1	1407	2e-21	1294 - 1353	97	58 / 60	plus
Harvest21	ABC09810	1609	3e-25	1528 - 1587	100	60 / 60	plus	ABC09810
Harvest35	U35_18623	1609	3e-25	1528 - 1587	100	60 / 60	plus

Contig Sequence (1609 bp)

>U35_18623 1609 Hv_44K_v2
GCAGCAGCAAGCAGACAAAGACAAACGCCCCCGACCCCGCCTCTCGCTCCTGCCGTCGCC
CTCACCACCGTGATCCGATCATACACGCGCGCGCGCGCGCGCAGCCCCTCGCCCCGCCCG
GCCTCGACGTCGTCCGCGCCTCCCTTCCCGCCGGCAGGCCCGAGGAAAGGCGTGGAGCAG
AGCGGAGCGGAGCTAGGCTAGCTAGGGCAGGAGGCGGCATGTCCGGGGGAGAGGAAGGAG
AAGGGCGCAAGGTGTCTCGCGAGGACATACAGCTCGTCCAGAATCTCATCGAACGTTGTC
TTCAGCTTTACATGAACCAGAAAGAAGTGGTTGGAACTCTATCTTTCCAGGCGAAAATAG
AACCCAGCTTTACTGAACTCGTCTGGCAGAAACTTGAAGAAGAGAACCCTGAGTTTTTTA
AGGCATATTATGTGAGGTTGATGCTTAAGAATCAAATATTGGTATTCAACAAGCTCCTTG
CGCATCAGGGTCGTCTTATGAATAAAGATCCTTCTGGAGCACTTTCTGTTACCCCCACTG
CTCCTAATGGCTCTGACTCGAGCACATTGAACCAAAATACATGTTTTTTACAAGACACTA
CTAGCACTGCAATTCCAGATAGCTTTCTACACAATGGAAGTTCTAGTGGTGTAATAAATG
GTGCTCCTGCTACTGAGCAGTTTATCTATGGTGGTAAAGTTGTCCATGGTCTTCCTAGTG
GTATGGATGCTTCAGTTAGTCTACTGTCAGCACATAATTCGACTGGTGGACAGTTTAATG
GAGATAATGGTACAACAATAAAGGCGGAGTCTAGCTATTCGAGTAATCCTGAAATTGCAT
TCTGCAACGAGAACACTTACCTAGAGCCTTGCCAATCAATTGGGGATGCCTCTGGTGGGT
CCTTTAGTAGCTCTGAACTGAATGGGCAACCACTTGGTGATCCAATTCTTGACATGGATA
CATCATCATATGGTTTCTTGAGCCAGATTCCTCGCAATTTCAGTTTCTCAGATTTAACAG
AGGATTTCAGTCATAGTACAGAAATATTAGAAAATTATGGCAGGTCCCCTTTCATCCCTT
CTGAGACGAACAACTTCTCAGAGTCTACTGCTGGAGGACATACAGAAATAGGAAATATAC
GGCTAGATTCCATATCTGAGGCTGTTAGTTATGAAGATTTTGGAAGTGATTAATCAGCTT
TTGATCATACTGCCTGAGTTTGAGCAGCGATGCGCCATCTGTACAGAGTCCTTTGGACAG
GCAAACCTCTATAATCATTTGTGGTGAACACAGCTAATTCGCGGAAACTGTTCATTGTTG
GACTTGGGTCCTGTGCCGTAGTAGAAAGATGCAAGAAATCTAGTATCTATGTTCATGTAT
CCTTGCTGATGGTATTGTAGAAGCCTTGTGTAGCTGTTTCAGTTACTCGAGATAGCATTA
GGTTTGGTTGGAGCTCTGTACCATGGTTGAGTTATCATCTGTGAGAATCTTGTATAAAGA
GTATTCTTACTGACGCACTTGTCATGGTTAGTACTTGTCCAATGTCATGTTCCACTTCCA
TTCAAACTGAAAATTATTAGTTGCCTCTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04450.1	330	5e-177	protein\|plant-specific domain TIGR01589 family protein, putative, expressed
Brachypodium v1_2	Bradi3g03260.1	335	0.0
Arabidopsis v10	AT3G10250.1	324	4e-84	Plant protein 1589 of unknown function \| chr3:3168371-3170418 REVERSE LENGTH=324