barSeed - Barley Seed Development Database

Probe CUST_31784_PI390587928

Source Contig U35_18629

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31784_PI390587928	Hv_44K_v2	CCTGTGAACAAGCATTCATTTGCGTTGAAGCAAATTTCTTTGAAAACTACAATTCATGTG	1228	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.423	1.452	1.266	0.890	0.436	0.557
Raw	289.852	457.327	349.440	381.203	66.074	94.002

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59150.7	1251	2e-24	1192 - 1251	100	60 / 60	plus	ABC10351
MLOC	MLOC_59151.2	6531	2e-24	3609 - 3668	100	60 / 60	plus	ABC10351 ABC16747
MLOC	MLOC_59151.1	7222	2e-24	4472 - 4531	100	60 / 60	plus	ABC10351 ABC16747
MLOC	MLOC_59150.3	7345	2e-24	1253 - 1312	100	60 / 60	plus	ABC10351 ABC16747
JLOC1	JLOC1_38469.2	4154	8e-25	2695 - 2754	100	60 / 60	minus
JLOC1	JLOC1_38469.1	4249	8e-25	2790 - 2849	100	60 / 60	minus
JLOC1	JLOC1_38468.2	2971	8e-25	1275 - 1334	100	60 / 60	plus
JLOC1	JLOC1_38468.1	2953	8e-25	1257 - 1316	100	60 / 60	plus
Harvest21	ABC10351	1299	3e-25	1229 - 1288	100	60 / 60	plus	ABC10351
Harvest35	U35_18629	1299	3e-25	1229 - 1288	100	60 / 60	plus

Contig Sequence (1299 bp)

>U35_18629 1299 Hv_44K_v2
CGCCTGTGCTGCACCCCCTCTCCCCTTCGCTCGCTGCCGTTCTTCTCTCCCCTCCACCCG
CCGCCACCGTCGCTGTCGCTGCCGTATTCTCCGCCCCATCCGATGGCTTCTGCTAGGGTA
CAAGCTGCTTCGGTTGCATTCGATCCCGCTCCGTTTAGGTTCTGGTGTCGGTTCGATTCT
AGGGTTTGATGCTTTGGTTCTGATGATTTGCCACTAGTTTGGTGCTGTCCCGCAGATGGA
GGACCGTGGAGCGTTTGGGACCAAGAGGTCGCGCAATGAAGTGTCCGTAAGGGAGGGGGA
CTGGAATTGTCTTCAGTGTGGTAATGTCAACTTCAGTTTTAGAAATGTTTGCAACCGTGG
AGCCTGCCGTGCACCTCGTCCATCACCGAGTCCAAGCCCAAGAATGATGTCAGCGCCTGC
TGGTGGTGGATATGATCGATCACCTCTATTTTATGGTAGCATTGGTGCCCCCTCGTCTCA
CATTCCTCTTGGATCAACTAGCTATGGTGCTCCATATCCGCATGTTGGAATGCGGTATGG
TTATGGTCCACCAGTAGGGCCTCATGGCTCATATGGTCTCATTTCTTCTTATGGCCAACC
TGGTCCAGTGGGGGGGATGGGTTATGCCCATGGACCTGAGTTGGATCGATGCGGCTATGG
ATATAGAGGATCTCCAATGCCGGTTTCTAGCCCATGGCCTGATGGAGCATTAGTGGAAAA
TAATGAGAACACTGCTTCACGAAAGCGCCGTGGAGGCCCAAATGGACTGTCTGAGGGTGA
CTGGGAATGCCCCAAGTGTGGTAATGTAAATTTTGCCTTCAGAAACACTTGCAACATGAA
GAAATGTGAAGAACCAAGGCCGACTCTTGGAACTAATTCAAGGTCGTCTCGCAAAGACAA
AGATGCCCCGGAAGGGAGCTGGACCTGTCCGGAGTGCAATAACCTGAACTACCCCTTCCG
CACAGTGTGCAATCGGAAAGGGTGCTCATATAGTAAGCCAGACTCAAGCAGTAAGCCAGA
CTCAAGCAACTAGTGCCACCTCTCAACCGCGATGAAAGCATTGTTGTATCCTAGCTATAC
GAGTCTGTAAACTGACTACACATTTAGTAAGCCAGACTCAAGCAACTAGTGCCACCTCTC
AACCGCGATGAAAGCATTGTTGTATCCTAGCTATACGAGTCTGTAAACTGACTGCACAAA
TGTGTTTTCTGTGGACTGGATTCTGCTCCCTGTGAACAAGCATTCATTTGCGTTGAAGCA
AATTTCTTTGAAAACTACAATTCATGTGAAAAAAAAAAA

Homology of Contig U35_18629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g30820.1	289	4e-132	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi1g27210.1	275	7e-143
Arabidopsis v10	None