barSeed - Barley Seed Development Database

Probe CUST_31777_PI390587928

Source Contig U35_20946

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31777_PI390587928	Hv_44K_v2	GGATGACAATCTTGCTTCGTGTTGTTTGCGCATTTCTAGATTTCCTCCATTTGTAAAAAA	790	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372804	2163	7e-23	2077 - 2133	100	57 / 57	plus	ABC09515 ABC13981
MLOC	MLOC_17540.1	1030	7e-23	113 - 169	100	57 / 57	minus	ABC09515 ABC13981
JLOC1	JLOC1_12109.1	1031	4e-23	113 - 169	100	57 / 57	minus
Harvest21	ABC13981	861	3e-25	791 - 850	100	60 / 60	plus	ABC13981
Harvest35	U35_20946	861	3e-25	791 - 850	100	60 / 60	plus

Contig Sequence (861 bp)

>U35_20946 861 Hv_44K_v2
TCGGCACCAGAGACTGTTGCATGGGGTGAAGGGCATAATTCTTGGGTTAGTGGAGTTGCT
TTTGATCCATATTGGTCCCCACCAAATTCTGATGGAACGGGAGAAAATGCGGTGTATCGT
TTTGGTTCCGTTGGTCAGGATACCCAATTGCTTTTGTGGGATTTGGCAATGGATGAGATT
GTTGTTCCACTGCGTCATCCTTCAGGTGGTTCACCAACATTTAGCAGTGGGAGCCCTTCT
GCACACTGGGACAGTGCATGCCCTCCAACAGGTATTCTTCAACCTTCTCCTAGAATGCGA
GACGTGCCGAAGCTTTCACCTCTTGTCGCCCACCGAGTACATGCAGATCCCCTGTCTGGT
GTGGTGTTCAGCACTGAATCAGTCGTCACTATTTGCCGTGAGGGACTAATCAAAATATGG
GCCAGACCTGCCCATACTGAAAATAATCAGCAGTCGAATTCTTCCGAGTTGGTTTTATGC
AATACTGTCTCCAAGGATAGGGCAATCACATCCTCCAGTAAAGCAAGTGGTTCTAGCTTC
AAGCAGCCTTCATCACCTGGCTTGACATAGCCATGAGTTTCTTACTAACACCATGATTGA
TGAGACGGACTCTCAAAGGAGTCTGCTGGTGATAAAGGCACATATTTGTAGATGTTCCTT
GATTACAGCAAGGCTAGTCAGTGGCACAAAACAATAATAGAACATGCCCCTGTACAGATA
CATATACTCAATGATAGCTAATACAAGTTTGCTTTCTGTTTTGTATTGCCCAATGTGCCA
ACATGTGATGGGATGACAATCTTGCTTCGTGTTGTTTGCGCATTTCTAGATTTCCTCCAT
TTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20946 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07450.2	564	1e-86	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g41400.1	568	7e-92
Arabidopsis v10	AT2G37160.2	573	7e-62	Transducin/WD40 repeat-like superfamily protein \| chr2:15609047-15612529 FORWARD LENGTH=573