- Probe CUST_31775_PI390587928
- Source Contig U35_20948
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31775_PI390587928 | Hv_44K_v2 | ATACTTAGGCGCAGATATTACCTTGTGGAGAAGGCAAAGGATGCAAATATTGTTGGCATT | 668 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.184 | 1.113 | 1.050 | 0.801 | 0.471 | 0.523 |
| Raw | 102.620 | 138.487 | 126.349 | 142.461 | 30.978 | 37.554 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365228 | 1828 | 7e-23 | 900 - 959 | 98 | 59 / 60 | plus | None |
| MLOC | AK252846.1 | 2008 | 7e-23 | 1023 - 1082 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_15720.1 | 1001 | 7e-23 | 879 - 938 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_15720.2 | 2777 | 7e-23 | 950 - 1009 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_15720.4 | 1237 | 7e-23 | 894 - 953 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_15720.3 | 1941 | 7e-23 | 950 - 1009 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_15720.7 | 2305 | 7e-23 | 493 - 552 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_15720.5 | 1805 | 7e-23 | 820 - 879 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_10804.3 | 1959 | 4e-23 | 888 - 947 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_10804.2 | 2163 | 4e-23 | 878 - 937 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_10804.1 | 1648 | 4e-23 | 577 - 636 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC16377 | 772 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20948 | 772 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus |
Contig Sequence (772 bp)
>U35_20948 772 Hv_44K_v2 TGTTCGTGATGGCCGACACCGCGTACAACTCGTGCTGCGTCGACGAGGTGGGGGCGTCCA ACATCGACGCCCAGTGCGTCGTCCACTACGGCCACTCCTGCATGAGCCCAACATCGAATT TGCCAGCTTTCTTCGTATTAGGGAAAGCACCATTGGACATCAGTTCGTGTTGCCGCTCAT TGCTGTACTGCTCGAGGGAAAGCAATAAACCCGTTCTTGTGTTATGTGGGTTAGAGTATG CACATGCTTTGGAAGATCTTAAAAGAGCCACTGTGGAATTATGCAAATCAGATTGTCAAA ATTCCAAAATCCATTATGCAGAAGTTCTGTGTTCGGAAATGAGTCCGTCATCAAGTCCTG CTGCAGAAGAGCAATGTTCTCAATCCAATGGAAGCACTCGTAATGATGGTTTGCCTGCAC ACAATGATGATTTGGCAACACTTGTTAACAGTTGCTGTAATGTGGAAGGGTCCACGCGCA AGTATAATCTTGGAGGCCTTACATGGCGCATATCCACCGATGAGAAAATGGACGACTATT TGTTATATTGGATTGGACAAGATAACTCTGCTTTTGCCAACGTTGCACTTACTTTCAATA AATGTGATATAGTTAGATACGACACAGTAGCAAATCAATTCTCAAGGGATGTCTCTCATC TGATGAAAATACTTAGGCGCAGATATTACCTTGTGGAGAAGGCAAAGGATGCAAATATTG TTGGCATTNTGGTGGGAACTCTAGGCGTTGCTGGTTACCTTGACATAATCGA
Homology of Contig U35_20948 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g16430.1 | 507 | 3e-113 | protein|diphthamide biosynthesis protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g20557.1 | 508 | 2e-132 | |
| Arabidopsis v10 | None |