barSeed - Barley Seed Development Database

Probe CUST_31772_PI390587928

Source Contig U35_32924

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31772_PI390587928	Hv_44K_v2	TCGGGAAAAGTTTCAGCACGTTCCTGTAGCATATGTTGATGGTAAATAAAATCGCTCCCA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14667.1	3229	2e-23	3070 - 3127	100	58 / 58	plus	None
MLOC	MLOC_14667.9	4393	2e-23	2550 - 2607	100	58 / 58	plus	None
Harvest35	U35_32924	373	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (373 bp)

>U35_32924 373 Hv_44K_v2
TGGGAGCGATTTTATTTACCATCAACATATGCTACAGGAACGTGCTGAAACTTTTCCCGA
TTGGGATCTCCAACTGTTCTGCACGAGCTCATCAACATCTCATTGGAGCGACTGAGTCTG
AAGCGCTCAAGACACTGAGGCAGCGTTGGAAGCGACCGAATATTCTGGCAGCGATCAAGG
CCCAGGTCCTTCAGTGACGTCAGGTACTCCATATGATCTGGCAAGGTGTCCCAGCTGCAA
CCGAAGATAAAGAGTGAACGGAGGTAAGGGCAAAACCCACCAAGTTCTGGGCCAAGTTCT
GTGCTGCAACAGTACAGGCTGAGTTGTTCAGATACTTTGGGCCACCATTGTGCTTACCCA
TCATCCAACTGGG

Homology of Contig U35_32924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None