barSeed - Barley Seed Development Database

Probe CUST_31769_PI390587928

Source Contig U35_18633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31769_PI390587928	Hv_44K_v2	TTCACGACAGCTCCACAAATTGATTGCTTGTGGTACAGGAAATGGTATTTTTGATGGAAA	449	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358731	1951	2e-24	1134 - 1193	100	60 / 60	plus	ABC10972
MLOC	AK355903	1848	2e-24	1150 - 1209	100	60 / 60	plus	ABC10972
MLOC	AK363372	2010	2e-24	1069 - 1128	100	60 / 60	plus	ABC10972
MLOC	MLOC_81756.1	1831	2e-24	873 - 932	100	60 / 60	minus	ABC10972
MLOC	MLOC_81756.2	1928	2e-24	971 - 1030	100	60 / 60	minus	ABC10972
JLOC1	JLOC1_54384.1	1937	8e-25	899 - 958	100	60 / 60	plus
Harvest21	ABC10972	1236	3e-25	450 - 509	100	60 / 60	plus	ABC10972
Harvest35	U35_18633	1236	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (1236 bp)

>U35_18633 1236 Hv_44K_v2
GTCCACATCATGTTCGCCTACAGCGGCAGCGACGGTGCTAGCAGCCTGATGATGTCGAAC
CCCAGGGTTCTGGTGATAGCGGAGAAGGGGGCGGAGGTCGCCATCGTCGAGGAGCATTTC
GGGGTCGGGGAAGAGGACGGTGGCTGCTATTGGGCCAACCCGGTGGTGGACATCATCGTC
GAGGAGGGTGCTAGAGTGGTTCATTCCTATGTGCAGCGACAGTCATCCGCCGCCGCACAT
ACCAAGTGGACCACCGTCCAGCAGAATACATCTAGTAAATATGAGTTTGTTGAGGTCAGC
ACCGGAGCAAGACTGAACAGGCACAATCTTCACATCCAGCAATTGGGTCCGGAGACTGAA
ACGGATTTATCAACATTTCACTTAACATCTCAGAATAAGCAGATTCATGATCTGCATAGC
AGACTAATACTTGATCACCCAAGAGGTTTTTCACGACAGCTCCACAAATTGATTGCTTGT
GGTACAGGAAATGGTATTTTTGATGGAAATATTCAAGTCAACAGGTATGCACAGCAAACC
GATGCAGGGCAACAAACCAAGTGTCTTCTGCTCTCACCAAAGGCTGTCGTGAATGTGAAG
CCAAACCTTCAGATCATCGCTGACGATGTCAAATGCACGCATGGAGCTGCCATCAGCGGG
GAGCTCGACCCGAACGAGCTCTTCTACTTCCAGGCGAGAGGCGTCGACGCCAACACGGCG
ACCGACGCCCTGCTTTTCTCGTTTGGAGCCCAAGTGATAAACCGCATTCCATTTAAGGCC
ATCGAGAAGAAGGCTCTAGCACAGCTCAAAGAGCTGCTCGCCGTGTCAAGACAAAACAAT
TGATGAGGCCCTGAGGAAATCTTTGAAGTGGTTCAACACTTTTTTTGTGTTGAGGCGGAA
AGAGCTGGGCGGGAACGATGGGAAGCTTTGGCACTGAACAAGGTGAGCGACTAGAACTGC
GTATGTTGATTGTTTGCCGGAGAAAATACCACTCTAGTCTTTTGAGATTTTGCTTATTAT
TTGTAAATTACTTGTTTATCCCTACCAAGAGCAAGAGTACATCAAGCTTCTTCTAAATAG
ATGTTTCTTCTTGTTAGTGGCAAATGTAGATTGTTACCCCTATCATTGCCGTCGCCGATG
TTCCACCCAACAGCTAGTTTGCACGTACAGTACAGTGAATGGAAGCTTTGCGCCGCAGAT
CTGTCCGTTTGTAATAATCCATATAGGGTTCGTTCT

Homology of Contig U35_18633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03650.1	483	3e-146	protein\|sufB/sufD domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g01870.1	479	1e-171
Arabidopsis v10	AT1G32500.1	475	4e-97	\| Symbols: ATNAP6, NAP6 \| non-intrinsic ABC protein 6 \| chr1:11750091-11751994 REVERSE LENGTH=475