barSeed - Barley Seed Development Database

Probe CUST_31767_PI390587928

Source Contig U35_18634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31767_PI390587928	Hv_44K_v2	CAACCGTGAATGAACAGGCTCTTTTTCTTTTCGAATCAATGATTACGAAAAACTGTCTTT	665	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.885	5.075	1.245	0.776	0.809	0.721
Raw	34.061	69.380	14.872	14.032	2.947	2.683

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375099	1546	2e-24	1451 - 1510	100	60 / 60	plus	ABC11602
MLOC	MLOC_21333.1	463	2e-24	362 - 421	100	60 / 60	plus	ABC11602
JLOC1	JLOC1_14808.1	456	8e-25	362 - 421	100	60 / 60	plus
Harvest21	ABC11602	571	3e-25	455 - 514	100	60 / 60	plus	ABC11602
Harvest35	U35_18634	779	3e-25	666 - 725	100	60 / 60	plus

Contig Sequence (779 bp)

>U35_18634 779 Hv_44K_v2
TGGACGCGCAGCCGGAGGGCAGCGTGGTGTTCCTCTGCTTCGGCAGCCTGGGCGTGTTCA
GCGCGGCGCAGATCAGGGAGATCGCCGTCGGGCTGGAGGCGAGCGGCAACCGGTTCCTGT
GGGTGGTCCGTAACCCGCCGAACGAGGACCCGGCGAGGAGGTTCGAGGAGCCGCCGGAGC
CCGACCTGGACGCCCTCCTCCCTCCGGGCTTCCTCGCCCGGACCCAAGAGAGAGGGCTGG
TGGTCATGTCGTGGGCGCCGCAGCGGGAGGTGCTCGCCCACGGATCGGTGGGCGGGTTCG
TGACCCACTGCGGGTGGAACTCGGTGCTGGAGGCGGTCATGGCGGGCGTGCCGATGCTGG
GGTGGCCGCTGTACGCGGAGCAGCGGATGAACAAAGTGTTGTTGGTGGAGGGAATGCAGC
TAGGCGTGGCGGTGGAACGAGGCGAGGATGGCTTCGTGACGGCAGAGGAGATCGAGAGGA
AGGTGACTTGGCTGATGGGTTCTGATGGCGGGAGGGAGCTTCGGGAGCGTACTCTGGCGG
CCATGAGAGGGGCAAGGGAGGCCCTGAGCGACGGTGGGGATTCCAGGGCGGCACTGCTGC
AGCTCGTGCAAAGGCTGAGCGCCCCCGATGTGACGGAGGAGAGTGTTTGCCAGCTGTAGC
TTGTGCAACCGTGAATGAACAGGCTCTTTTTCTTTTCGAATCAATGATTACGAAAAACTG
TCTTTATATATGACAAAACCTAATAAAGCGACAGATTTGCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50200.1	485	9e-86	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi2g47430.1	478	4e-87
Arabidopsis v10	AT3G16520.3	462	4e-65	\| Symbols: UGT88A1 \| UDP-glucosyl transferase 88A1 \| chr3:5619355-5620833 REVERSE LENGTH=462