- Probe CUST_31762_PI390587928
- Source Contig U35_44900
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31762_PI390587928 | Hv_44K_v2 | ATTTCCTAGGTTTGGTGAAATCCCGGTTTTGTCGGTCTGTATTATTTTTGTCCTCAAATT | 0 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.628 | 1.768 | 1.636 | 0.920 | 0.777 | 0.825 |
| Raw | 450.733 | 485.235 | 383.724 | 322.404 | 98.486 | 115.194 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC43143 | 339 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_44900 | 339 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus |
Contig Sequence (339 bp)
>U35_44900 339 Hv_44K_v2 AATTTGAGGACAAAAATAATACAGACCGACAAAACCGGGATTTCACCAAACCTAGGAAAT TGCTTAAAAATTCAAGGGGGAAATTTCCATTCCATTCCATTCTACCAAACCACCAGTGAT CAGTTTGTCCATGCCCCAAACAGCAAAACAGAGGAAACAAAACAGCGAGATCCTGCAATT CCCCCACAACAAAACATGAATCCTAAACAAAGGCTACCTCCTAATCTGGTTTCCGCGGGC AACGGATCTGGCGGGCCTAACCGCCAAAACCGTAAAGGGTGCGGCCCTGGCCCTTGACCC CGTAAACAACTTCCATGGCGGTGACGGTCTTGCGGCGGG
Homology of Contig U35_44900 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |