barSeed - Barley Seed Development Database

Probe CUST_31761_PI390587928

Source Contig U35_18638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31761_PI390587928	Hv_44K_v2	GAAGCTTCAGCCTGAAAGTGAAGAAATGGAGTATATTTGTAGTAGTAGTTATATGTTGTG	612	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3564.1	1434	2e-24	278 - 337	100	60 / 60	minus	ABC10764
MLOC	MLOC_3565.1	393	2e-24	69 - 128	100	60 / 60	minus	ABC10764
JLOC1	JLOC1_2145.1	1317	8e-25	161 - 220	100	60 / 60	minus
JLOC1	JLOC1_2144.1	380	8e-25	161 - 220	100	60 / 60	plus
Harvest21	ABC10764	791	3e-25	613 - 672	100	60 / 60	plus	ABC10764
Harvest35	U35_18638	816	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_49189	441	8e-21	103 - 160	97	56 / 58	minus

Contig Sequence (816 bp)

>U35_18638 816 Hv_44K_v2
CCGGAGTGCGTGCCTGTCGATGGAGGTCTCGGCCAGGCTCCGCCAGCCGCCCGCGGCCTT
GACGGCGCCGCCCCGCCGCGGCGGAGGGTCCCTGCGACTGCCACGGTTGCCCCCTTCAGC
TTGGCCCACCACTGCGCGCCTGAGCATCGACGACGCGCCGGCGGAGCACGCGGGCGAGTT
CGGGCGATGGCAGCTGCAGCACTTCGTGCTGGTGTCGGCGGCGTGGGCACTGGAGGCGCT
CCACACCATGGTCATCATCTTCGCGGACAGGGAGCCGGCCATGCGCTGCCACGCGGGGGA
AGGGCGGTGCGGCGAACGGTGAACCGGCGCGGCGGCCGGGTGGGAGTGGGCGCAGGGCGG
ACAGTGAGTGTCCTCCGCCGGCGGCAGCCCTCCCTCCCCACCGCCACGGCCTGCCTTGCC
CCGTCTTGAATCGCCTTTCACCAAACTCCGCTCCTCCATCGCGCTCCCTCGCCGCCGTTC
CCGACCACCAGACCACGTAGGCTGTGTGGCCTCCCTGCCTCCCCGGCCACGTCGCATCTC
GGCTGAATCACAGTAGATGCCTTCGTTCAGCCTGTACGAACATATCCAGAAGTGTTGTTT
CCTCTCATTGAAGAAGCTTCAGCCTGAAAGTGAAGAAATGGAGTATATTTGTAGTAGTAG
TTATATGTTGTGATAGTATCACATGTAATGGTGAAATGAATTATGTAAAGATTGTGCTAT
TATCCAAATTTGGCATGTGGTTTGATAATTTTCATTTATTCGCTGTTCTGACTGAAATAA
TTGTGTGGAAATTGAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None