barSeed - Barley Seed Development Database

Probe CUST_31750_PI390587928

Source Contig U35_20953

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31750_PI390587928	Hv_44K_v2	AATTCACCGCGGTTACCTCGCTGCTCAACCCGGAGCTGCACCACTACAACCCGTTCTTCT	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72503.2	2153	2e-24	1483 - 1542	100	60 / 60	minus	ABC40836
MLOC	MLOC_72503.1	2866	2e-24	1761 - 1820	100	60 / 60	minus	ABC40836
JLOC1	JLOC1_48224.1	2926	8e-25	1157 - 1216	100	60 / 60	plus
Harvest21	ABC40770	379	3e-25	16 - 75	100	60 / 60	plus
Harvest35	U35_20953	1037	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (1037 bp)

>U35_20953 1037 Hv_44K_v2
CGGCCGCGTGGTTCAGGAGCTGGGCGGCCGTGTACGCGACGGAGCTGGGCAGCGAGGAGA
CGGTGCGGGTCACGCCGCAGGGCGTGGCGGACATGAGCCCCGCCGTGTCCACGTCCGGCG
AGCTCCTCGCCGTCGCCTCGTACGGCGAGAGGCCGTGGGCGTTCGACTTCCACGAGCTCG
AGACGGAGGTCGCCGTGTTCCGTGCCGCCGACCCCGCCCACCGCGTCGTCGTCGCTGCTC
GGGGCGGCTGGCCGACCTGGCACGGGGAGGGCACGGTGTTCTTCCACCGCGTCGCCGATG
ACGGCTGGTGGAGCGTCTTCCGGGTGGACATCTCGCCGGAGACACTCGAGCCCTCCGGCG
CCGAGACGCGCGTGACGCCGCCGGGCGTGCACTGCTTCACCCCTGCCGCCGCGGGGCGAG
GCTGCCGTTGGATCGCTGTGGCGACGCGGCGGAAGGGGCTGGCGAAGCGCCACATCGAGC
TGTTCGACCTCGAGACAGAGCAATTCACCGCGGTTACCTCGCTGCTCAACCCGGAGCTGC
ACCACTACAACCCGTTCTTCTCGCCGTCCGGCGGGCGCCTCGGGTACCACCGGTTCCGTG
GTGCGGGCGTGCAGGGCGACTCGATGATCCCCTACCTGCAGCCTGTGCGCAGCCCGGTGA
GCTCCATCCGCATGCTCCGTGTGCACGGCTCCTTCCCGTCCTTCTCGCCGGACGCGAAGC
ACTTCGCCCTCAACGGCGACTTCTTCAAGTCCCCCGGCGTGACGATCCTCCGCGCCGACG
GCTCCAAGCGATGGGTGCTCGCCAAGCAGCCCAACCTGTTCTACACCTCGTGGAGCCCCA
CCGAGAGCGGGGTGGTGTTCACCTCCATCGGCCCCATCTTCGAGACCCCGAAAGCGACGG
TCCGGGTGGCGCGCATCGAGTTCGACCCCAGCGAGCTCACCGACGACCGCGGCGACGTGG
ACGTGGCCGTGAAAGAGCTGACCCGGCCGGAGGCCGGGCACGACGCGTTCCCGGCGGTGT
CNCCGTGCGGGCGGTGG

Homology of Contig U35_20953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44410.1	660	0.0	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g20050.1	675	0.0
Arabidopsis v10	AT4G01870.1	652	3e-128	tolB protein-related \| chr4:808473-810431 REVERSE LENGTH=652