barSeed - Barley Seed Development Database

Probe CUST_31746_PI390587928

Source Contig U35_20957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31746_PI390587928	Hv_44K_v2	CCATCAACTAATTCACCTTTAACCGGTTCTGCGTCGAGGTTGTCTTCCCTACAAAAGCTT	505	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.192	1.018	1.442	1.226	0.707	0.516
Raw	62.085	73.923	105.280	133.968	28.712	22.764

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369926	1455	2e-24	571 - 630	100	60 / 60	plus	None
MLOC	MLOC_18053.1	1170	2e-24	327 - 386	100	60 / 60	plus	None
JLOC1	JLOC1_12480.1	1318	8e-25	327 - 386	100	60 / 60	plus
Harvest21	ABC18821	870	3e-25	506 - 565	100	60 / 60	plus
Harvest35	U35_20957	870	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_20957 870 Hv_44K_v2
CGAAACCCTAGCCTCGACCCGCATCTAATTTGAGCCCGGTTCTACCCCCTCCCCCTCCCG
TCTTCTCCACGCGCGACCGCCGGCGACATCTCGCCGGAGACGCCGCCGACACGTCCACGG
AACCGACGCCTTCCACCGCCTACGCGTACCTTACTGTCGCGCGATCCAGGGTTCGATGGC
CGCGTCGTCTCCGGCTTCCAGCGGCAAGGCGGCGAGCGACTCCTCCGCGCCTCCTCCGGC
CCCTTCCCCCGTGGTATCCAATGGCAATGGTACGCCGCAGAAGCCGCCCCCCACCGCCGG
ATTCGACATGCCCAAGCCCAACCTCCGCGGCCTCAACAAGCCCAAGTGCATCCAGTGCGG
CAACGTCGCCCGCTCCCGGTGCCCGTTTCAGTGTTGCAAGAGCTGTTGCTACAAAGCTCA
GAACCCTTGCCACATTCATGTTCTCAAACAGAGCAACACACTGCCAGAGAAGACACTACC
AGCTCCTATCCCTTTGTCAGACCAACCATCAACTAATTCACCTTTAACCGGTTCTGCGTC
GAGGTTGTCTTCCCTACAAAAGCTTCCCCATCATTTTCTGAATTCAATCCGAACAAGAAA
GTCCCTTGCCAAGAAGGACATTGCAAGCATAAACAAGTGGAGGTTTATGAAGCTAAAGGA
ACACATGCAAGGAGATATCGATGTTGAAAATGAAGCATATGATAGATACACACAGAATAT
TGGATTGCTGGAGGAAACTTTCTATCTCAAAGAAGATTCTGGTGGTGAACATGAAACTGA
AGCAACTAACTCAGAAGAAATGATGGAAATAATGGTCTCTGAGGCAAAGGTGAGGTTAAA
GTCTGATTGCGCAAATGCAGCTGGCTTTAA

Homology of Contig U35_20957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03550.1	359	2e-112	protein\|expressed protein
Brachypodium v1_2	Bradi3g14240.1	376	3e-137
Arabidopsis v10	AT1G32730.1	327	1e-52	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). \| chr1:11841077-11842956 FORWARD LENGTH=327