barSeed - Barley Seed Development Database

Probe CUST_3173_PI390587928

Source Contig U35_34925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3173_PI390587928	Hv_44K_v2	AGAAGCTGGTTGACTCAGCATCAGATTCTAGGCAGAAGCAATTGTCCTTGCATCAATTGG	408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8741.1	2403	2e-24	773 - 832	100	60 / 60	minus	ABC14788
JLOC1	JLOC1_5792.1	2407	8e-25	1572 - 1631	100	60 / 60	plus
Harvest35	U35_34925	533	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_34925 533 Hv_44K_v2
GGGCGAATTGGGCCCTTTCCAAAATGCTCGAGCGGCCGCTACCGTATCTGTCAGCAGAAG
CTATCTTGGAGATGCTTGATTTTGCTAACAAATTCTGCTGTAAGGGCCTCAAGGATGCTT
GCGAGCAAAAGCTTGCTTCTTTTGTTTCTTCCAGGCAAGATGCTATAGATTTCATGGAAT
GTGCTATTGAGCTGGGCTGTTCCATCCTTGCCGCGTCATGCTTGCAGGTGCTCTTGAACG
AGCTTTCAGAATGCTTGAATGATGAGCAAGTGGTTAGGATATTCTCCTCTGCGAATAAGC
AGCAGAGATCCACTATGGCTGGCAGTGCATCTTTCTCCCTATATTGCCTTCTTGGTGAAG
TCTCCATGAGCATCAGTGCAATATCAGATGTGACTGTAAGCTTCTTGGAGAAGCTGGTTG
ACTCAGCATCAGATTCTAGGCAGAAGCAATTGTCCTTGCATCAATTGGCTTGCGTCAGGC
TGCTACGGAAAGATCATGCTGAAGCTGAGCGCCTGTTCAATGCCGCCTTTACC

Homology of Contig U35_34925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g37520.1	887	4e-93	protein\|BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed
Brachypodium v1_2	Bradi4g15130.1	889	3e-96
Arabidopsis v10	None