barSeed - Barley Seed Development Database

Probe CUST_31730_PI390587928

Source Contig U35_18649

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31730_PI390587928	Hv_44K_v2	TTATTTGTGTCCTTCGTCGCCTGGTTGGCACCCAACTAAAACAGAATGGACGAGAAAAAA	1196	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.648	1.333	1.122	0.950	0.393	0.316
Raw	168.055	210.851	156.955	209.610	30.723	26.837

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25318.1	1160	4e-23	964 - 1020	100	57 / 57	plus
Harvest21	ABC11788	985	3e-25	12 - 71	100	60 / 60	minus	ABC11788
Harvest35	U35_18649	1267	3e-25	1197 - 1256	100	60 / 60	plus

Contig Sequence (1267 bp)

>U35_18649 1267 Hv_44K_v2
CCTACTCCTCCCCCCACTTTTGACCCAGCTCCAGAGTTCCCCACGAAGCGAGCGTGCGCG
ACCTGACCGAATTCCCACCCGCCCCAAACCCTAGCCCATCCGCCCGCCGGGCCAGCGGCG
CCGATGCGGGGGCGCCTCCTGGAGGGCGCCATGGCGCTGGCGGTGGCGCCGGACGCCGCC
AACTCGTCGGGCTCCGGCGCCGCCCCCGGGTCGGGCCCCCTCTGGTGGCTGTCCGACTGC
CACGGGGCCTGGTACAGCCTGGCGGTGATGCTGCCGTCGCTGGCCTTCGTCGGGTTCCTG
GCGTGGCAGGCCCGCCGCAGCTTCCGCCGCCTCAGCTACGGCCGCTCCCACGTCGTCGTC
GTCGCCTACTACGCGCTCCTCTGGGCCGTCGCCCTCCTCAACCTCCTCTGGTGCTTCCTC
CAGGTGTGGCAGTGTATGCCTGATAGGGCATTCTCATGGAATGTGCTTTCATTGTTCACC
AAATCGGGAATGTTATTCTTGGAAGTTAGTCTTATAGCATTTCTGCTTCAAGGAAATGAA
GCCAGTGGTTATGAGTCTTTGGGACGTACCTTTGTCATCTCTGGTGCTGTAGTTAGTGCT
GATGTATTGCTCAAGACCATATATGTATTCGGCTTTGGTGTTCCTTTGTTTATCGATGCT
GACCAAGGAACTGGTGGGAAATGGGGCCTATGGATTCTCCACAAATTGGTGCTTACAGGA
GTCTATGGTTTGATTGTTTTCATGCATCACTCAAGGTGGAAAGACAGGCTACCTGCAAAA
CCGGCATATTACCAGTATGTGTGTGCAATGCTGGCACTTAACGGCCTATCGCTGTTTGGC
TGTTTCCTCGTTACATGTGGAGCTGGATTTGGTCTATGGCTTTACAACCTCACTACTGTC
TGTTACCATGCTCTTTACCTTCCACTTCTATATGTGACTTTCTTAGCAGACTTCTTCCAG
GAGGAAGACATGCTTCTGGAGAACGTATACTACTCGGAGATGAAAGATGCCGGGTTCTTT
GATGCTGACTGGGATTAAACCGTCTGATTCCATTCCACGCTGTATGACTTATTTGTACGT
GAATTTGCACGGAGTAGCTTCGTTCTGGAAACTGAATCTTAGAACAGAGATTGTACCCTA
ACAAGCAACAACCATTATAATCAATGAAAATGTGTAAATTTATCAATACACACACTTTAT
TTGTGTCCTTCGTCGCCTGGTTGGCACCCAACTAAAACAGAATGGACGAGAAAAAAAAAA
AAAAAAA

Homology of Contig U35_18649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54920.1	310	2e-169	protein\|expressed protein
Brachypodium v1_2	Bradi1g08217.2	299	4e-177
Arabidopsis v10	AT3G05010.1	300	1e-113	Protein of unknown function, transmembrane-40 \| chr3:1389603-1391462 FORWARD LENGTH=300