- Probe CUST_31729_PI390587928
- Source Contig U35_44911
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31729_PI390587928 | Hv_44K_v2 | TTTGCAAGTTTATGCGGTATAGTTGGTTTATTGGAGATTTGCAGTATTGTTTTTGGCTCA | 14 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.264 | 7.869 | 1.213 | 0.867 | 0.562 | 0.474 |
| Raw | 107.095 | 161.747 | 21.635 | 27.043 | 4.456 | 3.465 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC43162 | 397 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC43162 |
| Harvest35 | U35_44911 | 397 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (397 bp)
>U35_44911 397 Hv_44K_v2 TTTTTTTTTTTTTTTGAGCCAAAAACAATACTGCAAATCTCCAATAAACCAACTATACCG CATAAACTTGCAAAATCCCAATTCCGATGTTTTACATATATACCCCTTCACGTATAGTAT ACCCCCCCCCCCCCCTATGGCCCTATAAAATCTTGTAACTGGAAATGTTTGGGTTTTAAC TACCTTAGCTAACCTATATAGGGACTATACACAATGGCCCGTCTTTACATAATTACACCC CCAATGCCCTAGAGGTTTAGGATTAATGGCAGCCTAACCATGCCTAGGCTTTTAACCTTT TATTTCTATACAAACCCTAAATTGATTGATTAATCGATTTTTTTGTGATTCGTTTAATGG GTGGCGCTATGTAATATTGGTATTTCAAACTAGGCCA
Homology of Contig U35_44911 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |