barSeed - Barley Seed Development Database

Probe CUST_31728_PI390587928

Source Contig U35_44913

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31728_PI390587928	Hv_44K_v2	CCACCGGCATTGCGCCGGCAACATGCAGTACCCCAAGGGCTGGAGCTCGGAGCGGGTGCC	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357735	2017	2e-24	689 - 748	100	60 / 60	plus	None
MLOC	MLOC_71631.6	2414	2e-24	1491 - 1550	100	60 / 60	minus	ABC23067
MLOC	MLOC_71631.2	2408	2e-24	1640 - 1699	100	60 / 60	minus	ABC23067
MLOC	MLOC_71631.1	2429	2e-24	1640 - 1699	100	60 / 60	minus	ABC23067
MLOC	MLOC_71631.3	2739	2e-24	1620 - 1679	100	60 / 60	minus	ABC23067
MLOC	MLOC_71631.4	2601	2e-24	1620 - 1679	100	60 / 60	minus	ABC23067
MLOC	MLOC_71631.5	2867	2e-24	1602 - 1661	100	60 / 60	minus	ABC23067
JLOC1	JLOC1_47622.3	2677	8e-25	851 - 910	100	60 / 60	plus
JLOC1	JLOC1_47622.2	2897	8e-25	1071 - 1130	100	60 / 60	plus
Harvest21	ABC43167	429	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_44913	429	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_44913 429 Hv_44K_v2
TCCAGATCCGGGCCTCCTCCACCACCTCCACCTGCGCGGCAGCAGCCACGCCTCGCGTGC
CACAGCTCCCAGAGACGACGACGAGGCGGAGGCGGGCTACGACGCGGCCGGCTTGGAGGA
GGCGGCCGCCGGCGACTCCTTCTCACACTCGCTGAAAGAGTGCCAGAAGCAGCTGCAGCT
CAGGGCGGAGGCGCGGCCGCCGGCGGCCTCGCATGAGCTCGGCAACGGCGACGCGTTCGG
GGGGATCGAGCTGCTCGTGCTCTCGCCGAGGTGCCTGCTCGGGGCTGCCGTGGGAGGGAT
GAGCAAGAGCTCCACGGCGTCGTCGCGAAGCAGATCAGGCACGTTTCCGAGCCCCGGGAC
GCCCAACTACCACCGGCATTGCGCCGGCAACATGCAGTACCCCAAGGGCTGGAGCTCGGA
GCGGGTGCC

Homology of Contig U35_44913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None