barSeed - Barley Seed Development Database

Probe CUST_31720_PI390587928

Source Contig U35_20962

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31720_PI390587928	Hv_44K_v2	GCTCCTTTGATTCGAACAAGTTGTGGTATTTTTAGTTTCCAGACTCCTTTGATTCAAAAA	864	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.299	0.852	0.550	1.015	4.065	4.948
Raw	122.084	553.651	278.384	817.705	1086.905	1510.532

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57604.1	2766	2e-24	1148 - 1207	100	60 / 60	minus	None
JLOC1	JLOC1_37357.1	1249	8e-25	1005 - 1064	100	60 / 60	plus
Harvest35	U35_20962	936	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (936 bp)

>U35_20962 936 Hv_44K_v2
GCGCTAATTTCTCATCATCAGGCAACCAATCAATCCAAGTCCAAGGGAAATCAAATCTTC
GGCGAGAATGATGCAGGCGGTGGTCTCCAACCCGCAGCCCGTCACCGCGTCCCCGTGGGC
TGCTTGCCGCCCCAGGCGAGGCTCGGTGAGGGTCCGGTCCACCAGGAACGGAGCCGCCGA
TAACCTCGACCATCTGCGGAGGCCCCCGACGGCGACGGCTAGACAGCCGCGGCAGCAGGG
GAATGGGAATCCTGCTCCGCGGAGGAGGGTCATCCAAACCACGCCATTCGGGCTATGGGA
CAGCTTCCCGGACGCGCGAACGCTCGACCAGATGATGCGGACCATGGAGCGCATCATGGA
CGAGGAGGACGACGACGGCGGCCGCCGCCCTTTCGTGGTGCCGGGCGCGACAACCGTGTC
GCGGTCGCCCACGGAACGGCGCGCCGACGACCGGCGCGGGCGGTCGCCGTGGGAGATCAA
GGAGCGCGCGGGGGACTACCTGGTGCGGTTTGACATGCCGGGCATGTCGCGGGAGGACGT
GCGCGTGAGCGTGCAGGACCGGACGCTGGTGGTGGTCGCCGAGAAGGCGGCGAAGCAAGG
CGAGGCGGCCGGAGAGGACGGCAACGTGGAGGAGGGGGAGGAGGAGGAGCCGTGGCCGGC
GGCGAGCTACGGGCGGTACAGGACGCGGGTGGAGCTGCCGGAGAACGTGGAGGTGGAGAG
GATCGCCGCGGAGGTGAGGGACGGCGTGCTCTACCTCACCATCCCCAAGGTGTCGCCGTC
CGGTGGCAAAGTCGTCAGCATACAGGTGCAGTGATGGACATGGATAAGGCTAACGGGAGT
AGCTCAGAGTGTCTTAGTTTTGAGGCTCCTTTGATTCGAACAAGTTGTGGTATTTTTAGT
TTCCAGACTCCTTTGATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23140.1	252	5e-75	protein\|retrotransposon protein, putative, LINE subclass, expressed
Brachypodium v1_2	None
Arabidopsis v10	None