- Probe CUST_3171_PI390587928
- Source Contig U35_10970
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3171_PI390587928 | Hv_44K_v2 | ATGCCAATTACAGCGCAGGCACCAGAAAGTGCTGGAAAATTCTATGATGGTTTTGGTCAG | 174 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.947 | 1.731 | 1.156 | 0.731 | 0.413 | 0.368 |
| Raw | 1209.862 | 1626.694 | 969.571 | 907.545 | 194.635 | 185.262 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53826.1 | 2618 | 2e-24 | 2141 - 2200 | 100 | 60 / 60 | plus | ABC23513 |
| MLOC | MLOC_53826.2 | 2987 | 2e-24 | 2270 - 2329 | 100 | 60 / 60 | plus | ABC23513 |
| JLOC1 | JLOC1_34603.1 | 2729 | 8e-25 | 2138 - 2197 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23513 | 254 | 3e-25 | 175 - 234 | 100 | 60 / 60 | plus | ABC23513 |
| Harvest35 | U35_10970 | 254 | 3e-25 | 175 - 234 | 100 | 60 / 60 | plus |
Contig Sequence (254 bp)
>U35_10970 254 Hv_44K_v2 GAGCAATCTCAGACATGGCGTTACAACAGTTTGTGTCGTGAAGCACTTAGGTATGCTGAA GAAGGAGCATCATCTACAGAGGTTTATATTGTGGCAATGCAGGCTCTTCAAGAGGCTGCT AACAAAGTAAATATGGCCAAGAGAGCGATTGGACAGGTAGCACCTTTGGCAGTAATGCCA ATTACAGCGCAGGCACCAGAAAGTGCTGGAAAATTCTATGATGGTTTTGGTCAGCNNAAA AAAAAAAAAAAAAA
Homology of Contig U35_10970 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |