barSeed - Barley Seed Development Database

Probe CUST_31719_PI390587928

Source Contig U35_20963

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31719_PI390587928	Hv_44K_v2	TATACTACCTGACGCTGAGATCAAGTGTGGGAAATTGAAGTTACTTTGCCCCTCGCCAAA	1355	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.885	1.594	1.063	0.894	0.548	0.677
Raw	944.438	1186.461	720.887	917.578	207.228	277.015

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35350.1	1514	4e-23	1379 - 1435	100	57 / 57	plus
Harvest35	U35_20963	1429	3e-25	1356 - 1415	100	60 / 60	plus

Contig Sequence (1429 bp)

>U35_20963 1429 Hv_44K_v2
CGAAAACGAGAGCTGAAAGCGGCAACCACCCACCCGACCCCGCCTCCTCCTCCTCCCCTC
CCGGGCCAGAGTCCACCCTCGCCCCCCCTCTCCTCCGCCCGCCGACACCGCCAAATTCAC
CACTCCCCCCCTCGTCGTCCTCAGCCGACAGATTCCCGGCCGCGAAGCTCGCTTCCCGCG
AGATCCCGCGGCCGCAATGGAGGTGAGGACAGTAAAAGTTGGCAATATTTCATTGAGTGC
CTCAAAAAGGGAGATCACAGAGTTCTTCTCTTTCTCTGGTGATATAGAATATGTTGAAAT
GCAAAGCGAAACTGATTGGTCACAACTTGCGTACGTCACGTTTAAGGACTCACAAGGAGC
AGACACTGCTGTGCTTCTCTCAGGGGCAACGATTGTTGATCTTCATGTCATCATAACTCC
AGTTGAGAACTATCAGTTGCCTCCTGAAGCCCGCAAACAATTACTGGGAGAAAATTCTCC
CTCTGCTGAATCTGCAGTCAGGAAGGCGGAGGATGTTGTGAGCAGCATGATGGCCAAGGG
TTTTGTGCTCAGCAAGGACGCACTCAACATGGCAAGGTCTTTCGACGAGCGTCACAACAT
CATGTCCACCGCCACCGCCACCGTCGTGTCTCTAGACCACCAGTACGGGCTGAGCGAGAA
GATCAGCCTGGGCCGGGCGGTCGTCGGCAGCAAGGTCAAGGAGGTGGACGAGCGGTACCA
GGTGTCGGAGCTCACGAGGTCCGCCCTGGCCGCCGCCGAGCAGAAGGCGAGCGTCGCGGG
CTCGGCCCTCATGGGCAACCAGTACGTCTCGGCGGGCGCCTCCTGGCTGACCAGCGCATT
CGGCATGGTGACCAAGGCGGCGGGCGACATGGGCTCCATGGCCAAGGACAAGGTAGACAG
GGCCGAGGAGGAGAGGAAGGCCATCATGTGGGAGGAGAGGAACGGGCTGGTGAGCGAGTA
CGCCAAGATCCATCTTGATGATCACTCCTCCTGGGAGCCCGCGGTCCTTCCCGTGGAATC
GGTGGACGAGCAGAAGCTCCAGGCCGTGTGATGGCATCCGATCCGACAAACCGGAACGGT
AGCCGCTTCGACCGGTGTGTGGCATTTGTTGATTGTTACTTCCTGTCAATGTCCGACATA
TATATAGAGAGATCCTTTTTTTCCGCCGCTGCGGCGCTGAAGCAGAAACAGGGTGCTGCC
TGTCTATCAGCGCCTGTAGTGTATTGTAAATTTTAGATTGCTGCGCTTGTGTCCCTATCA
GGTTTGTTATACTGTTAGAAAGGTTTTTTCTTTTTCTTTTCTCATTATTGTTTTTCTCTG
CTACCATAGAATGCAATTCTGCTCGTTGGATGTAATATACTACCTGACGCTGAGATCAAG
TGTGGGAAATTGAAGTTACTTTGCCCCTCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20963 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50560.1	285	1e-168	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g10760.1	285	4e-174
Arabidopsis v10	AT4G17720.1	313	3e-88	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr4:9862660-9864498 REVERSE LENGTH=313