barSeed - Barley Seed Development Database

Probe CUST_31709_PI390587928

Source Contig U35_18650

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31709_PI390587928	Hv_44K_v2	TTGCTGGTTAATCTGAATTTTTTGAATGCAAAGCCAAGATATCCCCTTTTCATGTGGTTC	1022	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32662.1	3145	2e-24	6 - 65	100	60 / 60	minus	ABC14350
JLOC1	JLOC1_21265.1	3463	8e-25	3179 - 3238	100	60 / 60	plus
Harvest35	U35_18650	1099	3e-25	1023 - 1082	100	60 / 60	plus

Contig Sequence (1099 bp)

>U35_18650 1099 Hv_44K_v2
GAGGCCGCTCTCGTGGAAGAAGCGGCTCGAGATCTGCATCGGCGCCGCCCGGGGGCTCTA
CTACCTGCACACCGGCGTGAAGCACACCATCATCCACCGCGACGTCAAGACCACCAACAT
CCTGCTCGACGACAAGTGGGTCGCCAAGGTCTCCGACTTCGGGCTGTCCAAGACGGGCCC
CAACATGGACGCCACCCACGTGAGCACCGTCGTCAAGGGCAGCTTCGGGTACCTCGACCC
GGAGTACTTCCGCCGGCAGCAGCTCTCGGAGAAGTCCGACGTCTACTCCTTCGGCGTGGT
GCTGTTCGAGGTGCTCTGCGCGCGGCCGGCCCTGAGCCCGTCGCTGCCCAAGGAGCAGAT
CAGCCTCGCCGACTGGGCGCTGCGGTGCCAGAAGCAAGGCGTGCTCGGCCAGATCATCGA
CCCGATGCTCCAGGGGAGGATCGCTCCCCAGTGCTTCGTCAAGTTCACGGAGACGGCGGA
GAAATGCGTGGCCGACCGCAGCGTCGACAGACCGTCCATGGGCGACGTGCTCTGGAATCT
CGAGTTTGCGCTCCAGCTGCAGGAGAGCGACGAGGACACCAGCAGCCTCACGGACGGGAT
GCTGTCGTCGTCGGGCGCGTCGCCTCTCGTGATGACCAGACTGCAGTCCGACGAGCCGTC
GACGGACGCAAGCACCACCACAACGTCCACGACCACGATGAGCATGACCGGACGGAGCAT
CGCGAGCGTGGACTCGGATGGGCTCACGCCGAGCACCGTTTTCTCGCAGCTCATGCGTCC
GGGTGGCAGATGAAGTTGGACTCTCCGCAGATTCATGGTCATGGACAACATTCTTGGTCC
ACATTCATGTTGCAGGTGCCAGTAATTAGTAATTAGAGTGCGTATAATATGATACACGCC
TTATGACAATTCAGGTACGGAGCCACTTATTAGGACTCTGTATGTATATTGTACCATGTA
CCAGACAGACATCATCGTCATAGATGTCGCCGAGGCACTGGAGTTGCGGTTCTTACTACT
GGTTGCTGGTTAATCTGAATTTTTTGAATGCAAAGCCAAGATATCCCCTTTTCATGTGGT
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25450.1	882	3e-142	protein\|TKL_IRAK_CrRLK1L-1.3 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
Brachypodium v1_2	Bradi2g31490.1	879	6e-142
Arabidopsis v10	AT3G51550.1	895	9e-112	\| Symbols: FER \| Malectin/receptor-like protein kinase family protein \| chr3:19117877-19120564 REVERSE LENGTH=895