barSeed - Barley Seed Development Database

Probe CUST_31706_PI390587928

Source Contig U35_18653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31706_PI390587928	Hv_44K_v2	ATGTACATGGTGGTGTTCGGGGTCGTCCAGATCTTCTTCTCCCAGGTCCCCAACTTCCAC	682	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360230	1818	2e-24	684 - 743	100	60 / 60	plus	ABC02996 ABC02997 ABC14547
MLOC	MLOC_20198.1	1822	2e-24	1160 - 1219	100	60 / 60	minus	ABC02996 ABC02997 ABC14547
JLOC1	JLOC1_14008.1	1855	8e-25	535 - 594	100	60 / 60	plus
Harvest21	ABC15581	869	3e-25	670 - 729	100	60 / 60	plus
Harvest35	U35_18653	882	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (882 bp)

>U35_18653 882 Hv_44K_v2
AAAAAACGCCACTCTGAACCGAGCGGCTCTTCTCTCTGATTGTCATTCACTCGTTCTGGA
CAGCCGCACCTACCATCCTCGCAGACAGAGACCCGGCGAGGGAGCGAGGAAGGGGGAGAG
AGGAAGGGGAGAGACCACGAACGCTGACGGAGAGATGACCAAGGACGTGGAGATGGCGGC
GCGGAACGGCAGCAAAGGCGCCGCCGCCGGGGAGGCGTACTACCCCTCTCCCCCGGGGCA
GGGCGGCGACGTCGACGTCGACGACGACGGCAAGCAGCGGCGAACAGGGACGGTATGGAC
AGCCAGTGCGCACATCATCACGGCCGTCATCGGCTCCGGCGTGCTCTCCCTCGCCTGGGC
GACGGCACAGCTCGGCTGGGTCGTCGGGCCGGTCACCCTGATGCTGTTCGCCGCAATCAC
CTACTACACCTCCGGCCTCCTCGCCGATTGCTACCGCACCGGCGATCCGCTCACCGGGAA
GAGAAACTACACCTACATGGACGCCGTCGCATCCTACTTGAGTCGCTGGCAGGTGTGGGC
CTGTGGCGTTTTCCAGTACGTCAACTTGGTCGGGACTGCAATCGGGTACACGATCACAGC
GTCCATCAGCGCGGCTGCTATCAACAAGGCCAACTGCTTCCACAAGAACGGCCGGGCGGC
CGACTGCGGCGTGTACGACTCCATGTACATGGTGGTGTTCGGGGTCGTCCAGATCTTCTT
CTCCCAGGTCCCCAACTTCCACGACCTGTGGTGGCTCTCCATCCTCGCCGCCGTCATGTC
CTTCACCTACGCCTCCATCGCCGTCGGCCTCTCCCTGGCGCAGACCATATCGGGTCCGAC
CGGCAAGTCCACCCTGACCGGCACCGAGGTTGGAGTGGACGT

Homology of Contig U35_18653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36180.1	488	4e-116	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g37990.1	493	1e-132
Arabidopsis v10	AT1G58360.1	485	9e-76	\| Symbols: AAP1, NAT2 \| amino acid permease 1 \| chr1:21676623-21680313 FORWARD LENGTH=485