barSeed - Barley Seed Development Database

Probe CUST_31705_PI390587928

Source Contig U35_18654

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31705_PI390587928	Hv_44K_v2	GCAGCGGCTTCTCGAGTATGGACGTAAATAAACTCGGCAAATTAAAATGCAGGATTGCTG	1543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366970	1601	2e-24	1525 - 1584	100	60 / 60	plus	ABC01536 ABC09567
Harvest21	ABC09567	1624	3e-25	1544 - 1603	100	60 / 60	plus	ABC09567
Harvest35	U35_18654	1624	3e-25	1544 - 1603	100	60 / 60	plus

Contig Sequence (1624 bp)

>U35_18654 1624 Hv_44K_v2
TGCACTTCCCACTGATACAGAAGGGGATGAAAGAACAAATATGCCAGCCAACAAGATGAG
AAGATCAACCGATCAGCTGCAAAACTAGGCTTGAGAAGTGGAACGAGCAGTGGTATTGGA
CCTCTGATCATCCCTCTCCGACCAAAGAGTCCACCGAGCCAGCAGATAAACTGTCGACCA
TTCTCTGCAGATCACTTCTGGCTTGCATATTAAAACAATGGATGAACTGCGCCCTCCATC
TGTGGTCCAGAAGCTCCATGGACAGTCCATGTTGCTCAGACAAATTTCTTCTTTTGCCAT
GAGAAGTCCTGTAATCGACAATGCACATTTTGCGCGCAATTTCTCTGTGACAAAATACCA
TCAGACGAATGGAAGTATTGGGCGTTTGCCTCTCAATACACCATCCCCGATGTGTGCCCC
CGCGCCCGAAGAGAAGGGGTTTTCTGGATTCATGATTGATTTTCTAATGGGTGGAGTTTC
TGCTGCCGTCTCTAAAACGGCGGCTGCTCCAATTGAGCGTGTTAAGCTCTTGATTCAGAA
CCAGGATGAAATGATCAAGAGTGGCAGGCTCTCTCATCCTTACAAAAGTATAGGTGATTG
CTTCTCCCGCACAATAAAAGATGAGGGTGTGGTTGCACTTTGGAGGGGTAACACAGCCAA
TGTTATCCGTTACTTCCCGACTCAGGCCTTGAACTTTGCCTTCAAGGACCACTTTAAGCG
AATGTTCAACTTTAGAAAGGACAAGGATGGGTACTGGAAGTGGTTCTTTGGCAACATAGC
TTCCGGAGGAGCCGCCGGTGCTTCTTCTCTGTTGTTTGTGTATTCTCTCGATTACGCTCG
AACTCGTCTCGCCAATGATGCCAAGGCTGCAAAGGTGGGTGGCCAGAGGCAGTTCGACGG
CATCGTGGATGTCTATCGCAAGACCCTTGCTAGCGACGGTGTCCGCGGCTTGTACCGTGG
GTTCAACGTCTCTTGTGTGGGCATCATCGTTTATCGAGGTCTTTACTTCGGAATGTACGA
CTCCCTCAAGCCCGCGGTTCTCGTCGGTTCTCTTGAGGATAACTTGCTTGCCAGTTTCTT
GCTTGGCTGGGGCGTAACGATGGGTGCTGGGCTCGCCTCGTATCCTATCGATACCGTGCG
CCGCCGTATGATGATGACATCTGGTGAGTCCGTGAAGTATAAGAACTCCATGGATGCTTT
CAAGAAGATCGTCGCCGAAGAGGGTGCCAAGTCCCTCTTCAAGGGTGCTGGCGCCAACAT
CCTTCGTGCCGTTGCGGGTGCTGGTGTCCTCGCCGTCTATGACAAGCTCCAGGTGGTCGT
CTTTGGCAAGAAGTATGGATCCGGTGGTGGCTAAATACGGATGGTGGTGGCTAAATTTTG
CGTGGTGGTGTAGTGCTGCTTTTGAATAAAATGTGCCATATGTATAGACTGTATTTACGC
GCATATCTTGTAGGCCTAAATTTTGTCTGATGGTAATGGGATCGCTGCACATGCCAAAGT
TCCCATTGTTTGCCAGTTTCGTTAGTCGGAAGCCGGGAGCTCGGCAGCGGCTTCTCGAGT
ATGGACGTAAATAAACTCGGCAAATTAAAATGCAGGATTGCTGTTTTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_18654 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g23720.1	381	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi3g53520.1	385	3e-174
Arabidopsis v10	AT4G28390.1	379	0.0	\| Symbols: AAC3, ATAAC3 \| ADP/ATP carrier 3 \| chr4:14041486-14042781 REVERSE LENGTH=379