barSeed - Barley Seed Development Database

Probe CUST_31699_PI390587928

Source Contig U35_2887

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31699_PI390587928	Hv_44K_v2	AAGTGAGATCATTCAGTGGCCGAGAACTGTAGACCAACCTATCTTATATTTAAGGGGCCG	1094	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.427	1.348	1.141	0.952	0.396	0.337
Raw	262.004	388.997	288.388	372.525	56.347	50.527

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08433	1168	3e-25	15 - 74	100	60 / 60	minus	ABC08433
Harvest35	U35_2887	1168	3e-25	1095 - 1154	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_2887 1168 Hv_44K_v2
GGGAGAACTCCCCACAAGACCATCAAATTCCCCACCCGCAACCCTTTGCTCGACTCAAAA
CCCTCGACAAGCGCCGTCGACCTCGCGCGGCCGCCGCAACAATGGCGTCCCTTTTCAAGG
ACCCGAGCAAGCTGTCGGTGTACAGGGACCGGCGGTTCCCTGGGACACAGGAGGAGTTTG
AGGGGGCGCTGCTGGCGTCGCTGACGGTGTACGTGGGGAACATGTCCTTCTACACCACGG
AGGAGCAGGCCTACGAGCTATTCTCCCGCGCCGGCGAGATAAAAAAGATCATCATGGGCC
TCGACAAGAACACCAAGACCCCCTGCGGCTTCTGCTTCATACTGTACTACTCCAGGGAAG
ATGCTGAAGATGCAGTAAAATATATTAGTGGCACAATGCTTGACGATCGCCCAATTCGTG
TTGATTTTGATTGGGGCTTTGAAGAAGGCAGGCAATGGGGCCGTGGAAGGAGTGGTGGAC
AAGTCCGAGACGAGTACCGCACGGATTATGATCCTGGAAGAGGTGGCTATGGCAAGATGG
TTCAGAAAGAGCTAGAAGCACAAAGAGAATTAGTTGACTATGGTGTAGGTTTTCAAACGA
ATGCTCCACCGCAGTTTGATAGAGCTGACAGGAAGAGAGGATATGGTGACCGGAATGACA
GAGGAGATTACCAACGGAGACGATCAGCACCAGATATGGCCAGGAGAGCAACTGACTCGG
ATTCTAAGAGAGATGCTAATCAAGAGCCTGAAAAGAATCCCAGGTTTCGGGAGAAAGGTG
ATTCTGATGATGAAGACGAGGACTATGATAAGAAACGCCGGCGCTGAACATGAGAAGCAA
ATTGCTGCCATATTCAAATGCCCAATGACTACAATAGTAGTATTATCTATCTATCCTGTA
TGCCATATGACTTGATTTTCCCTTGAGCCATTCACATTTTGTCTGCGTTTTAGAATCAGT
TCATCAGCACAGTGCAGCCTTTGCATATGACTCTGCACCCCCTGAAACTCTTGCATGTGT
ATGCTGCTGATTAAGACTATTAGTTTTAAGAATAGTTACAGGAACATGAATCTCCAGAAA
GTTATGACTAGTCGAAGTGAGATCATTCAGTGGCCGAGAACTGTAGACCAACCTATCTTA
TATTTAAGGGGCCGCCTAGCGTCAGCTA

Homology of Contig U35_2887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39890.1	244	2e-118	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g48560.1	241	8e-140
Arabidopsis v10	AT5G44200.1	257	2e-99	\| Symbols: CBP20, ATCBP20 \| CAP-binding protein 20 \| chr5:17802062-17803875 REVERSE LENGTH=257