barSeed - Barley Seed Development Database

Probe CUST_31674_PI390587928

Source Contig U35_17612

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31674_PI390587928	Hv_44K_v2	TGGTTCGCCCGGAATTTATCGTATTGCAATATATATAAGGGATGCTACTCATTCAAAAAA	1411	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.068	0.366	1.362	1.594	0.943	1.046
Raw	1292.616	10736.107	36545.567	63689.300	14070.283	16930.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7363.1	1840	5e-22	1607 - 1661	100	55 / 55	plus
Harvest21	ABC07380	1482	3e-25	1412 - 1471	100	60 / 60	plus	ABC07380
Harvest35	U35_17612	1482	3e-25	1412 - 1471	100	60 / 60	plus

Contig Sequence (1482 bp)

>U35_17612 1482 Hv_44K_v2
GAGGAAACTTCCAGATAAAATATAGTGACCGATCGAGTTTGCAGTTTTGCTAAGGGTGAT
GGGGACCGAGAAAGGCGAGGAAGGAACGGGCGAGGAGCGCGTGGAGGTGCGCACGGGGCC
GAGGCCAGCGCTGCCGGCGCCGCAGCAGCGGGCGGTGGACGAGTTCTGGAGGAAGCAGCA
GGAGGAGATGGAGGCGACGGTGGACTTCAATGACCGGATACTGCCCATGGCCCGCCTCAA
GAGGGTCATCCGCGCCGAGGAGGACGGCATGATGATCGCCGCGGACACGCCGGCGTACCT
GGCCAAGCTCTGCGAGCTCTTCGTGCAGGAGCTCGCCTTGCGCGCCTGGGCGTGCGCCCA
GTCCCACCACCGCCGCATCATACTCGACTCGGACATCGCCGAGGCCGTCGCCTACACCGA
GTCCTACGACTTCCTCACCACCCTGCTCCTCGAGCACCAACGGGAGGCGCGGCTGGTCGG
CCGTGCTACTGCTACGCCGGCCACGGCTCCGGCAACGGCGGCGAGGCTCATCACCAGGAA
GCGCCACATGCCGGACCCGAATCCTCCGCGGCAGGTGCATGGGGTGCGGATAATTCGTCC
ACGTGCGCTTCCTATCACGCCTACTCCGCCGCCGTTGGACGTTCGCTACGTGCCGGTGCC
GTTTCCGTTCCCCTCGGCGCCGATCGGAGCCACAGCGACGGCGGAGGGGCTGATGATTCT
CCCACCCATCAACCACGCGACCACGGGTCGCGCGTTCTTCTTGGACCGGAACAGCGGCAC
TAGCTTCGAAGGTGAAAACTCTGCTGCTGAAACTATGGCATCTCCTCCTCCGGCAGGGCC
TGCAGAATCAGTGGCGCAGCCCAGTGTCTATCCTGCTGCTTACTACTTGTGCTCTTACCC
GTTGACCAACGACGTTGAGGACTTTGCGGTTGGCAACACTGATCCGATTGTCATCCCACC
GGAGATTGTAGAGGGAAACGTCGCCGATGGCAACGGCGACGGCGGACCGCAGCAGCACCA
GAGCGCAAACGTCGGTGGTCACCGCGAGAGTGTGGTGGTGGTGCAGCGAAGCAGTGATGT
GCTGGATGCTGGTGCTGGCGGTGCAGGTGGGATGTTTCTGGAGGAGATCCTCATGGATGA
AGACCTGCTGTTTCCCGACGCCGAGCTTTTCCCGTTGGTGGGCGCTGCACCTGGTCCTGA
TCCGGAGGATTTCATCGTCGACCAAGATGTTCTCGACGACGTCTTTGCCAACCCGAGCAG
CAGCACCGGCAGCGGCTGAACAGAAAGAAGATCAGAGCGGGACGCAGCATCGTTTGATTC
AGTCGTCTCCCGACATTACTACATATATGCCATCCGCTATGTATCAAATTTGGGAATAAG
TTTGTGTTCGTGCGTGTGACGTGGAACTGTATGGTTCGCCCGGAATTTATCGTATTGCAA
TATATATAAGGGATGCTACTCATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17612 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None