barSeed - Barley Seed Development Database

Probe CUST_31662_PI390587928

Source Contig U35_31912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31662_PI390587928	Hv_44K_v2	ATCCTCCTGCACGTCCGCTCCACTAATGTTCTATACGGCGCTGACTGGGGCTCCGTCACC	386	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.813	0.817	1.835	1.953	0.915	0.767
Raw	113.176	175.268	349.591	567.709	98.002	89.287

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374192	1222	2e-24	398 - 457	100	60 / 60	plus	ABC04226 ABC38813
MLOC	MLOC_45092.2	788	2e-24	500 - 559	100	60 / 60	minus	ABC04226
MLOC	MLOC_45092.1	890	2e-24	602 - 661	100	60 / 60	minus	ABC04226
JLOC1	JLOC1_29262.1	911	8e-25	246 - 305	100	60 / 60	plus
Harvest21	ABC04226	1227	3e-25	358 - 417	100	60 / 60	plus	ABC04226
Harvest35	U35_31912	457	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_15423	1214	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (457 bp)

>U35_31912 457 Hv_44K_v2
GTTCCTCGCATTTTCCAAGTCTTCCATTTCTTCCAGCAGCTTCTCCCCCCTTCCCCACTG
CTCCCAAGCAAAGGCGAGAACCCTAGCCTCACCAGAACCGCACGGAGATCCCGACCATCA
CCGCGATGCAGGCCCCTGCGAAGCCCCCCGTCGAACTCCCGCCGCTGGTGGCGCCGCCGC
CGCGGGTGAAAGCGCCGACCCCGCGCCCCCCTCCGCCGGCCTCGCTCCAGCCCGACTCCC
CGGGCGTCTTCTTCACCAACGCTGCCGCAGCCGCCCCACTGGGCTCCGCCCACCGCCGCA
TCGCCNTCGCCGTCGATCTGTCCGACGAGTCCGCCTACGCCGTANGCTGGGCCGTCGCCN
ACTACCTCCGGCCCGGGGACGCCGTCATCCTCCTGCACGTCCGCTCCACTAATGTTCTAT
ACGGCGCTGACTGGGGCTCCGTCACCCCCACGTCCCC

Homology of Contig U35_31912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None