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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31657_PI390587928Hv_44K_v2TCATACTTGCAATTTTTCTGGAGTATATGGAATAAGCAGGGCTTCACGTACAGTAAAAAA1570GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55378.169299e-22304 - 35810055 / 55minus ABC00911 ABC17473
JLOC1JLOC1_35713.1719135e-221677 - 173110055 / 55plus
JLOC1JLOC1_35713.1618735e-221637 - 169110055 / 55plus
JLOC1JLOC1_35713.1518815e-221645 - 169910055 / 55plus
JLOC1JLOC1_35713.1418875e-221651 - 170510055 / 55plus
JLOC1JLOC1_35713.1318815e-221645 - 169910055 / 55plus
JLOC1JLOC1_35713.1221145e-221878 - 193210055 / 55plus
JLOC1JLOC1_35713.1121035e-221867 - 192110055 / 55plus
JLOC1JLOC1_35713.1021025e-221866 - 192010055 / 55plus
JLOC1JLOC1_35713.918645e-221628 - 168210055 / 55plus
JLOC1JLOC1_35713.819665e-221730 - 178410055 / 55plus
JLOC1JLOC1_35713.720725e-221836 - 189010055 / 55plus
JLOC1JLOC1_35713.617235e-221487 - 154110055 / 55plus
JLOC1JLOC1_35713.519625e-221726 - 178010055 / 55plus
JLOC1JLOC1_35713.418205e-221584 - 163810055 / 55plus
JLOC1JLOC1_35713.318965e-221660 - 171410055 / 55plus
JLOC1JLOC1_35713.219055e-221669 - 172310055 / 55plus
JLOC1JLOC1_35713.117265e-221490 - 154410055 / 55plus
Harvest21ABC008266793e-2511 - 7010060 / 60minus
Harvest35U35_1762216403e-251571 - 163010060 / 60plus



Contig Sequence (1640 bp)

>U35_17622 1640 Hv_44K_v2
GGGGGAGAGCAACACCAACGCAAACCCGTTCACCTCGCCCGCTCCAGCGGTCTCACCGGC
GCCGCACCGTGCTTCCTCCTCTCCCCTCAAGCCCAAGGCCGCCGCCTCCGGTGTGGTGAT
TGTGCCGCTCCAGCCGTGGTGATCGACGGCCCGTGCACGGTTTCGGACCTGTTGCATTGC
ATATAAGATGCAAGGCATATCTGTGTGCGATTCGGTCGTCTCGCCCCATGGAACAAGCTG
CAGATCAGCTTGTGTTGCCAGGAATGATCTGAGGTTCTGTTACAAAATAAATCCAGTAAG
CCATGGGGCATGCGCGTGGCGCTGGTGTGCGGAAAAGCTGCACGTGAGGACCGACCGCAG
AAAAATGAACACCACAGTAAGGACCAATGCCAGATGGTTCTTTGGGGGAGATGCTCGTAA
TAGCAACAGTGATGGTAATGCTAAGGCGAGGCTGGAGCGCAGTGAGTCTGCTAACGAAGA
CATCTTGATCTTCTACTTTCAGCTGGATGTACAGACTCGGATACAGTATGCATTGAATAT
AGAGCAATTTGATGCGGCAAAGCAATTAAGGGAAAAGCTCGCTGAGATGGAAACAGAGAT
AAATAGGCAGCGTGAAGCTAAAAGAGGTTCATCGAAGAATGAAGCTCAAGATAAATCTTT
AAATCTCCTACGTGCGCGTGCAGATTTGCAGAAGGCCATTGAGAGCGAGAACTATGCTTT
GGCAGCTGAGCTGCGTGACACAATCGCTAAGCTTGAGGGTGATTCTCTGGCACTCTCTGC
TAAAGCCCTGGCTTACCAAAGTGTGAAATATGAGTTTCGACTAGGGCAAAAAGTACGCCA
CAAAGTACATGGATATAGAGCTGTGATATGTGGCATGGATCCTGTGTGCTGTGAATCTAA
GTCATGGATGGAGACAGCAAATGTGGAGAAGTTATCTAAAGGACCAAATCAACCTTTTTA
TCAAGTGCTGGTTGATGTATATGCTGATCCAGAACTCCTTGTTGCATATGTCGCAGAAGA
AAATCTTTTAGAAGCTGACGAATCAGAGAAAGGAAGGTTTGAGCACCCCTACACCGAATT
CCTATTTTATGGTGAGGACATGGCTCGGGACTTCATTCCTGTGAAGCAACTCCGTGAGAA
GTATGACCAGCCACGTTATGAAGCTTCTGGAGATGAAAATGACGACGATGGCACTACAGA
TAGCTAAACGGAGTTTTTCTAAGAACATTCCTTATTCACCACCACCAATGAGGATGGGAG
AAGATAGAGGATCGAAGTACTATCTGTCGTAGCTACAGTACCACTGAGTGGGCAAGTGTA
ATGAAGACCGAGTCATCGTGGAATTGCAAGAAGACACAAAAACCTGCAATGAGAGGAGCT
ACATGCAGTATCTGACCTTGCAGATTGGGGAGGCATTGCACTGATAAAATGCGCAACTTC
CTCCTGCCCTTTTGAGTGCAAGTGGTTCTAAAGTCAGTGAATGTGAAGAAGATCCTGATG
GATATTCATTGTATATTTGGTCGAGTTTTACTGCAGCTCTGACCCCTCTGATGGGCATAT
GTACATAGCATCATACTTGCAATTTTTCTGGAGTATATGGAATAAGCAGGGCTTCACGTA
CAGTAAAAAAAAAAAAAAAA



Homology of Contig U35_17622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g55880.15270.0protein|hemimethylated DNA binding domain containing protein, expressed
Brachypodium v1_2Bradi2g50810.23380.0
Arabidopsis v10AT2G03390.13305e-114uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330