- Probe CUST_31656_PI390587928
- Source Contig U35_31916
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31656_PI390587928 | Hv_44K_v2 | GCAGCCCCACCGTCGTCGTGACGGCGACCGACTTCTGCGCCCCCAACTTCGGCCTCGCCG | 415 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.207 | 0.213 | 0.645 | 1.632 | 1.532 | 2.597 |
| Raw | 66.458 | 96.340 | 280.785 | 1074.125 | 361.893 | 671.915 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16701.3 | 993 | 2e-24 | 574 - 633 | 100 | 60 / 60 | minus | ABC32912 |
| MLOC | MLOC_16701.2 | 1174 | 2e-24 | 588 - 647 | 100 | 60 / 60 | minus | ABC32912 |
| MLOC | MLOC_16701.1 | 1319 | 2e-24 | 774 - 833 | 100 | 60 / 60 | minus | ABC32912 |
| JLOC1 | JLOC1_11524.1 | 1546 | 8e-25 | 561 - 620 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31916 | 475 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (475 bp)
>U35_31916 475 Hv_44K_v2 ACAAAGCAAACCGCACGCCGCCGCCCCAACACGCAAGCCCGGCCCTTCATCCGTCCAACC CGCAAGCGAGCCCGGCCGTGATCACCAGGCGCAGGCGCCATGATGGGCTCTCTGCTCCTG CCCTCCCTGCTGCTGCTGCTGCTGCTGGTCTCCGAGGTCAGGTTCAGCGGCGGCGTCAGG CTGGCGGGCAATGGCGGCTACGAGGACTGGAGGCTGGGCACGGCCACCTACATCAAGGAG TCCCAGGGCCACCCGCTCAACGACGGTGGCGGCGCTTGCGGGTACGGGGACCTGGACATA TTCAGGTACGGGAGGTACACGGCCGGGCTGAGCGGCGCGCTGTTCGGGCGGGGCAGCGCC TGCGGCGGCTGCTACGAGCTCCGGTGCGTGAACAACATCCTCTATTGCCTGCGGGGCAGC CCCACCGTCGTCGTGACGGCGACCGACTTCTGCGCCCCCAACTTCGGCCTCGCCG
Homology of Contig U35_31916 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g41700.1 | 261 | 1e-63 | protein|expansin precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g35830.1 | 264 | 4e-68 | |
| Arabidopsis v10 | None |