barSeed - Barley Seed Development Database

Probe CUST_31655_PI390587928

Source Contig U35_17623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31655_PI390587928	Hv_44K_v2	TTGCCAGGAATGATCTGAGGTTCTGTTACAAAATAAATCCAGTAAGCCATGGGGCATGCG	525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55378.3	1857	2e-24	493 - 552	100	60 / 60	plus	ABC00911
MLOC	MLOC_55378.2	1709	2e-24	332 - 391	100	60 / 60	plus	ABC00911
MLOC	MLOC_55378.1	6929	2e-24	4172 - 4231	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.20	1406	2e-24	762 - 821	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.17	4556	2e-24	990 - 1049	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.18	4545	2e-24	979 - 1038	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.16	1520	2e-24	1090 - 1149	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.14	4592	2e-24	1260 - 1319	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.15	4541	2e-24	1142 - 1201	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.6	2073	2e-24	1315 - 1374	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.7	2057	2e-24	1299 - 1358	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.8	1930	2e-24	1297 - 1356	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.12	1669	2e-24	1287 - 1346	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.13	1664	2e-24	1282 - 1341	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.19	1017	2e-24	671 - 730	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.5	1783	2e-24	1391 - 1450	100	60 / 60	minus	ABC00911
MLOC	MLOC_55378.4	1741	2e-24	1390 - 1449	100	60 / 60	minus	ABC00911
JLOC1	JLOC1_35713.17	1913	8e-25	361 - 420	100	60 / 60	plus
JLOC1	JLOC1_35713.16	1873	8e-25	325 - 384	100	60 / 60	plus
JLOC1	JLOC1_35713.15	1881	8e-25	325 - 384	100	60 / 60	plus
JLOC1	JLOC1_35713.14	1887	8e-25	324 - 383	100	60 / 60	plus
JLOC1	JLOC1_35713.13	1881	8e-25	323 - 382	100	60 / 60	plus
JLOC1	JLOC1_35713.12	2114	8e-25	551 - 610	100	60 / 60	plus
JLOC1	JLOC1_35713.11	2103	8e-25	551 - 610	100	60 / 60	plus
JLOC1	JLOC1_35713.10	2102	8e-25	546 - 605	100	60 / 60	plus
JLOC1	JLOC1_35713.9	1864	8e-25	314 - 373	100	60 / 60	plus
JLOC1	JLOC1_35713.8	1966	8e-25	527 - 586	100	60 / 60	plus
JLOC1	JLOC1_35713.7	2072	8e-25	527 - 586	100	60 / 60	plus
JLOC1	JLOC1_35713.6	1723	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_35713.5	1962	8e-25	517 - 576	100	60 / 60	plus
JLOC1	JLOC1_35713.4	1820	8e-25	273 - 332	100	60 / 60	plus
JLOC1	JLOC1_35713.3	1896	8e-25	349 - 408	100	60 / 60	plus
JLOC1	JLOC1_35713.2	1905	8e-25	347 - 406	100	60 / 60	plus
JLOC1	JLOC1_35713.1	1726	8e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC00911	1887	3e-25	526 - 585	100	60 / 60	plus	ABC00911
Harvest35	U35_17623	652	3e-25	526 - 585	100	60 / 60	plus
Harvest35	U35_17622	1640	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_17623 652 Hv_44K_v2
GCTGGGCGCTGTCTATCCACCCACATCCACCACCGCGGCATAGCAAGGGAGACAGAGCGC
AACACCAACGCAAACCCGTTCGCCTCGCCCGCTCCAGCGGTCTCACCGGCGCCGCACCGT
GCTTCCTCCTCTCCCCTCAAGCCCAACCCAAGGCCGCCGCCTCCGGTAACCGAGCTCTGC
TCTCTCCCCGCCCCGCCTTGAATTTCTCGTTCCCCGCCGGACCGGTCCTCCGCGAACCCT
GTAGCATCGTCCTCCTCTCGTCTTGGTACCTGAACGCCAGTTCTGCAACTAGAAACAGAT
TGACCAGCATTTTTAGGGATTAGAGGGACATGCCCCGCACTTTTTTACATAGGATTTCTA
GCACTGCTCTTGTTAATTCAGGTGTGGTGATTGTGCCGCTCCAGCCGTGGTGATCGACGG
CCCGTGCATGGTTTCGGACCTGTTGCATTGCATATAAGATGCAAGGCATATCTGTGTGCG
ATTCGGTCGTCTCGCCCCATGGAACAAGCTGCAGATCAGCTTGTGTTGCCAGGAATGATC
TGAGGTTCTGTTACAAAATAAATCCAGTAAGCCATGGGGCATGCGGGTGGCGCTGGTGTG
CGGAAAAGCTGCACGTGAGGACCAACCGCAGAAAAATGAACACCACAGTAAG

Homology of Contig U35_17623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None