barSeed - Barley Seed Development Database

Probe CUST_31653_PI390587928

Source Contig U35_17624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31653_PI390587928	Hv_44K_v2	GGCATATGTACATAGCATCATACTTGCAATTTTTCTGGAGGTATATGAATAAGCAGGGCT	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55378.3	1857	3e-21	1792 - 1851	97	59 / 61	plus	ABC00911
MLOC	MLOC_55378.2	1709	3e-21	1642 - 1701	97	59 / 61	plus	ABC00911
MLOC	MLOC_55378.1	6929	3e-21	316 - 375	97	59 / 61	minus	ABC00911 ABC17473
MLOC	MLOC_55378.6	2073	3e-21	5 - 64	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.7	2057	3e-21	5 - 64	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.8	1930	3e-21	5 - 64	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.9	1086	3e-21	1 - 60	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.10	1075	3e-21	1 - 60	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.11	1186	3e-21	1 - 60	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.5	1783	3e-21	5 - 64	97	59 / 61	minus	ABC00911
MLOC	MLOC_55378.4	1741	3e-21	5 - 64	97	59 / 61	minus	ABC00911
JLOC1	JLOC1_35713.17	1913	2e-21	1660 - 1719	97	59 / 61	plus
JLOC1	JLOC1_35713.16	1873	2e-21	1620 - 1679	97	59 / 61	plus
JLOC1	JLOC1_35713.15	1881	2e-21	1628 - 1687	97	59 / 61	plus
JLOC1	JLOC1_35713.14	1887	2e-21	1634 - 1693	97	59 / 61	plus
JLOC1	JLOC1_35713.13	1881	2e-21	1628 - 1687	97	59 / 61	plus
JLOC1	JLOC1_35713.12	2114	2e-21	1861 - 1920	97	59 / 61	plus
JLOC1	JLOC1_35713.11	2103	2e-21	1850 - 1909	97	59 / 61	plus
JLOC1	JLOC1_35713.10	2102	2e-21	1849 - 1908	97	59 / 61	plus
JLOC1	JLOC1_35713.9	1864	2e-21	1611 - 1670	97	59 / 61	plus
JLOC1	JLOC1_35713.8	1966	2e-21	1713 - 1772	97	59 / 61	plus
JLOC1	JLOC1_35713.7	2072	2e-21	1819 - 1878	97	59 / 61	plus
JLOC1	JLOC1_35713.6	1723	2e-21	1470 - 1529	97	59 / 61	plus
JLOC1	JLOC1_35713.5	1962	2e-21	1709 - 1768	97	59 / 61	plus
JLOC1	JLOC1_35713.4	1820	2e-21	1567 - 1626	97	59 / 61	plus
JLOC1	JLOC1_35713.3	1896	2e-21	1643 - 1702	97	59 / 61	plus
JLOC1	JLOC1_35713.2	1905	2e-21	1652 - 1711	97	59 / 61	plus
JLOC1	JLOC1_35713.1	1726	2e-21	1473 - 1532	97	59 / 61	plus
Harvest21	ABC50271	685	1e-23	8 - 68	98	60 / 61	minus
Harvest21	ABC00985	698	5e-23	2 - 60	98	59 / 60	minus
Harvest21	ABC00826	679	6e-22	28 - 87	97	59 / 61	minus
Harvest21	ABC00911	1887	8e-21	1836 - 1887	100	52 / 52	plus	ABC00911
Harvest35	U35_17624	697	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_17622	1640	6e-22	1554 - 1613	97	59 / 61	plus
Harvest35	U35_17621	870	6e-22	605 - 664	97	59 / 61	plus

Contig Sequence (697 bp)

>U35_17624 697 Hv_44K_v2
AGAAGTTATCTAAAGGACCAAATCAACCTTTTTATCAAGTTCTGGTTGATGTATATGCTG
ATCCAGAACTCCTTGTTGCATATGTCGCAGAAGAAAATCTTTTAGAAGCTGACGAATCAG
AGAAAGGAAGGTTTGAGCACCCCTACACCGAATTCCTATTTTATGGCGAGGACATGGCTC
GGGACTTCATTCCTGTGAAGCAACTCCGTGAAAAGTATGACCAGCCACGTTATGAAGCTT
CCGGAGATGAAAATGACGACGATGGCACTACAGATAGCTAAACGGTAGCAGGAGTTTTTC
TAAGAACGTTCCTTATTCACCACCACCAATGAGGATCAGAGAAGATAGAGGATCGAGGTA
CTATCTGTCGTAGCTACAGTAGGACTGAGTGGGCAAGTGTAATGAAGACCGAGTCATCGT
GGAATTGCAAGAAGACACAAAAACCTGCAATGAGAGGAGCTACATGCAGTATCTGACCTT
GCAGATTGGGGAGGCATTGCACTGATAAAATGCGCAACTTCCTCCTGCCCTTTTGAGTGC
AAGTGGTTCTAAAGTCAGTGAATGTGAAGAAGATCCTGATGGATATTCAGTGTATATTTG
GTCGAGTTTTACTGCAGCTCTGACCCCTCTGATGGGCATATGTACATAGCATCATACTTG
CAATTTTTCTGGAGGTATATGAATAAGCAGGGCTTCA

Homology of Contig U35_17624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None