barSeed - Barley Seed Development Database

Probe CUST_31652_PI390587928

Source Contig U35_31918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31652_PI390587928	Hv_44K_v2	ACAAGAGCTCCGAGTTCACCAAGACCAGCGCCAGAGATCAGGTCGTCAAGGAGGTGAAGA	252	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18031.1	1949	2e-24	862 - 921	100	60 / 60	plus	ABC02631 ABC48478
JLOC1	JLOC1_12462.1	2116	8e-25	874 - 933	100	60 / 60	plus
Harvest21	ABC02631	1061	3e-25	75 - 134	100	60 / 60	plus	ABC02631
Harvest21	ABC02629	1272	3e-25	754 - 813	100	60 / 60	plus
Harvest35	U35_31918	468	3e-25	253 - 312	100	60 / 60	plus
Harvest35	U35_599	1869	3e-25	804 - 863	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_31918 468 Hv_44K_v2
AACACCAGCTAGCCAACAGAGCCAAACTTTACTCGCCGGCAGTGGTAGGCAGCACATCGA
TCGAGAAGATCCCACGAATTAACACCTCGCGCGACATCGTCGTGGCGTGGCGCGGCACCG
TCCAGAACATGGAGTGGGTCAACGACCTCGACTTCGTTCCCGTGCCCGCCGCGCCCGTGC
TGGGCTCCGCGGCCAGCCAGAACCGCCTCGCCGTCGTGCACCATGGGTTCCTCTCCATGT
ACACGTCAAGCAACAAGAGCTCCGAGTTCACCAAGACCAGCGCCAGAGATCAGGTCGTCA
AGGAGGTGAAGAGGCTGGTGGAGCTGTACAAGGACGAGGAGGTCAGCATCACCGTGTGCG
GCCACAGCCTCGGCGCGTCGATCGCCACCCTGAACGCCGTTGACATGGTGTCTAGCGGCA
TCAACAAGCCCGAAGGCGCCATCCAATCCTTCCCCGTGACAGCCATCG

Homology of Contig U35_31918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49840.1	408	4e-53	protein\|phospholipase, putative, expressed
Brachypodium v1_2	Bradi3g36540.1	439	9e-63
Arabidopsis v10	None