barSeed - Barley Seed Development Database

Probe CUST_31648_PI390587928

Source Contig U35_17628

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31648_PI390587928	Hv_44K_v2	GGTCCTTGTTGATACTACTTAATATACTGCTACTTTATTTGTGCATGTATGCAGAGAGTA	1037	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.788	0.883	3.460	3.530	0.910	0.675
Raw	699.884	1226.260	4361.693	6842.763	636.714	508.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39328.4	1403	2e-24	1101 - 1160	100	60 / 60	plus	ABC15105
JLOC1	JLOC1_25638.1	1351	8e-25	128 - 187	100	60 / 60	minus
JLOC1	JLOC1_25637.1	2059	8e-25	1884 - 1943	100	60 / 60	plus
Harvest35	U35_17628	1124	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1124 bp)

>U35_17628 1124 Hv_44K_v2
CCCACCTCATCCTGTTCGTGCTGCCTTCACTGCTCCCCCGCCGTGCACTCGCTCAGGGAT
TTTGGGCAAAGCAGGGGACCTTCAAGATGAGGCTCAGAGCAGGCGTTTTTACCGTGGCCA
TGCTCGCCATTGCCGTGCTCTCCTCCCCAGCATTCGCGCAGAAGACGAAGAGCCCCCCTG
CTCCGCCGGCGGCCGTCCTCCCGCCGTCCCCAGCGCCGGCTCCGGCGCCGCGCCATGTGG
ACCTCGCGGATCTCCTGAGCGTGGCCGGCCCGTTCCACACCTTCCTGGACTACCTCCAGA
AGACCAGCGTCCTGGAGACGTTCCAGAGCAAGGCGAACGACACCAAGGAGGAGGGGATCA
CCATGTTCGTGCCCAAGGACTCTGCCTTCGCGGCGCTGAGAACGACGACGTTCGCCAACC
TCACTAGCGACCAGCTCAAGTCGCTGATGCTGTACCACGCGCTGCCCAAGTACTACTCGT
TGGCCGAGTTCAACAAGCTGAGCAGCCTCAACCCGGTGGCCACCTTCGCGGGGTCACAGT
ACACGCTCAACCTCACCGACAACATGGGCAGCATCCGGATCAAGTCCATGTGGTCCAACC
CCAAGATCAGCAGCAGCGTCTACTCCACCCGTCCGGTCGCCGTCTACGAGGTGGACAAAG
TGCTGCTGCCGATGCAGATCTTCAAGAGCGACCCGCCGCTGGCCCCGGCTCCCGCGCCCG
CCCCCGACGACGCCAAGTCCTCTGATGACGCGCCTAGCCCGGCGTCGGGGAAGCCGGCGA
GCCAGAAGGCCAAGGCAGGGTCCAAGAGCGCGTCCCACTGCGCCGGCGTCGGTGTCGCCA
GTTACCTGGCGGTCGCCGTCTCAGGTGGCCTGATGATGCTCTTATGAGTGCGAGAGGCTA
ATGAGAGAGGTCAGTGGCGGGGTTCATCCGTGCTGCCCCGCTGCTTAATTTTTACTACAT
GGATTGTTGCTGAGTTCATTCTTTGGACATAGTAGGCGTTGTGCTAGGATTTGCTAGGAG
TATATGCTTCTGTGCTTGGTCCTTGTTGATACTACTTAATATACTGCTACTTTATTTGTG
CATGTATGCAGAGAGTATTTCAGTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30486.1	268	7e-76	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi3g39740.1	275	4e-94
Arabidopsis v10	AT2G04780.1	254	3e-58	\| Symbols: FLA7 \| FASCICLIN-like arabinoogalactan 7 \| chr2:1677488-1678252 FORWARD LENGTH=254