barSeed - Barley Seed Development Database

Probe CUST_3163_PI390587928

Source Contig U35_46903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3163_PI390587928	Hv_44K_v2	AGGGGAAACTTGATGCCTTTTTGTATTAGGGTTGCTTTATTACACCCCTTTCAGAAAATT	39	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.346	2.105	1.710	0.794	0.257	0.315
Raw	76.795	114.502	77.092	57.354	5.366	8.376

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49802.1	2969	2e-24	2876 - 2935	100	60 / 60	plus	ABC47564
JLOC1	JLOC1_31856.1	2789	8e-25	2702 - 2761	100	60 / 60	plus
Harvest21	ABC47564	517	3e-25	40 - 99	100	60 / 60	minus	ABC47564
Harvest35	U35_46903	517	3e-25	40 - 99	100	60 / 60	minus

Contig Sequence (517 bp)

>U35_46903 517 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAGACAAGATTTCCCTTTTTAATTTTCTGAAAGGGGTGTAA
TAAAGCAACCCTAATACAAAAAGGCATCAAGTTTCCCCTAAAAAGGGGGCCTCTACTTTA
TAATGCAGTCATTTTCATTAAATAAAACACAAGGAAACGATGAGAAGAATGATTCAACCC
AATAAACCATGGAAAAAAATACAAGCCAAGTTTCAGGCACTGTGAATAATGCAACGACAA
CGATCTCAGCAAGCTGGACTGAGATAGCCTAGAATAATCTCTGATTTGTTTAGCTTCTGT
TTATCAAACCTGCAGCTATATTTTAGTTTTGGAGTCATGCCCTTCTCATGTGTGAGCTAT
ATATGTCCTGGGCAAAGCTGTAGCTGCTAACTGCTGCAACAATCACGGTTTTCGCCTGCA
AATCAGTTCAGGCCCTAGAGTTGTGCAACTCATCAGCGCGTTGGTTCAGTCTGAGGGAGC
TGAGACGTGCTCCTGTGCAGCCGAGACCCGGCCCTTT

Homology of Contig U35_46903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None