- Probe CUST_31638_PI390587928
- Source Contig U35_29608
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31638_PI390587928 | Hv_44K_v2 | AGGTGCAGATGGAGCTGCACCAGTTCCGCCGCTTCACTGACGAGAAGATAGCCCTCGACG | 221 | GeneList: grey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.233 | 1.037 | 1.064 | 0.454 | 0.786 | 1.236 |
| Raw | 14.344 | 17.618 | 16.448 | 9.312 | 5.109 | 11.210 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7263.1 | 672 | 2e-24 | 429 - 488 | 100 | 60 / 60 | minus | None |
| Harvest21 | ABC28970 | 363 | 3e-25 | 222 - 281 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_29608 | 363 | 3e-25 | 222 - 281 | 100 | 60 / 60 | minus |
Contig Sequence (363 bp)
>U35_29608 363 Hv_44K_v2 CCTGACTGTGCTCGAGGAGGCAGATCCAACGCTCCAGATCCGCGACTACGGCGTCCTCCT CGCTCCCTTCCTGGTCGTCGTCGTGGCCCTGCCCCTCAAAGTCGTCGGCGTCGGGCAGCG GGATGCTGAGGCGGAGGCATGTTTGCACGGAGACTGGAGCGGGCGGGCGCGAGGCAGCGC GCGGCCGGCGACGAGGGCGCGGAGGTGGTCGATCTCGACGGCGTCGAGGGCTATCTTCTC GTCAGTGAAGCGGCGGAACTGGTGCAGCTCCATCTGCACCTTGGCCTTCTCCCGCTGCAG GCGCATCATCATAACCATGGCCTCGCTCGCGATGCCGACCTCGACGAGGCCTCCTCCTCC ACC
Homology of Contig U35_29608 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |