barSeed - Barley Seed Development Database

Probe CUST_31632_PI390587928

Source Contig U35_17630

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31632_PI390587928	Hv_44K_v2	ATCCTAAATAAGCGAGTACCAATCGGAATGTGGATATATTTTCTGGTAACACAAGAGCCA	1043	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.945	2.946	0.625	0.470	1.070	0.953
Raw	25.628	30.354	3.824	3.599	3.180	2.970

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10826.1	909	4e-23	828 - 888	98	60 / 61	plus
Harvest21	ABC07363	1103	3e-25	1 - 60	100	60 / 60	minus	ABC07363
Harvest35	U35_17630	1103	3e-25	1044 - 1103	100	60 / 60	plus

Contig Sequence (1103 bp)

>U35_17630 1103 Hv_44K_v2
GAGGAGGTGGAGATCCTGAAGCCTACGGGCTCAAGTTCGCCAAGGGCCGCGACGGCGGCA
CCTACATCGAGGCCATCTTCCCCGGCTCCTCCGCCGAGCAGACCGGCAAGTTCACCGTCG
GTGACAAGGTTATCGCCACCAGTGCCGTCTTTGGAGAGGAAATCTGGCCGGCGGCAGGGT
ACGGCCAGACCATGTACTGCATCCGTCAGAGAGTTGGCCCTCTCTACATGAAGATGCAGA
AGAAATTTGGGAAATGGGATGGTGTTGCTGAGCTCTCGGACAAGGAGGTCATCAGGGCTG
AAAGGAACACGGGAAACGTCAGCACTAAACTCAGAGAGATTCAGATGCAAAATTACCAGA
AGAAGATGGAGCAGAAGATCCAAAGAGAAGATGACCTTCGCATGGGGCTAAAGCTGTACA
AGGATGGAAAATACGAGGAGGCATTAGAGAAGTTCGAGTCGGTGCTGGGGTCAAAACCAG
AGATTGATGAAGCTTCCGTAGCCAGCTACAATGTCGCGTGCTGTTATTCGAAGCTCGACC
GGATACAAGCTGGCCTTTCTGCACTTGAAGAAGCCATGAAAGCAGGCTATGAAGACTTCA
AGAGGATTCGCACCGACCCGGATTTAGCAAACTTGAGGAACTCGGAGGAGTTCGCCACCC
TGCTAAACAAGTACGATGAATCGTTTATCAATGAGAACGCCATCAATGCTATCAAATCCA
TATTTGGATTCGGTAAGAAGTGATGACCTACTATCGATTGCACACATCTAACTTGGTCTT
GCAGTTTGCACACTTGACCATACAGTGCAGCCCCCTCTCTCCCTCCCTCCCTCCCTCTGC
CACTAGTTCGAAACACTAGTTCTAGTTTGTTCTTGCTGAGACTTCGGAGATATCTCCAGG
AATGTTTTTAGCCTTCCTTTGTACTTCAACCATTCTATGAACATACACTTTGTACATCCA
AATGGCAATCCTCCATTGGGAAGCAAATGCCATGTACAGGAAATATGTTACCATCGTGCT
TGTAAGTTGTAATATACTGAGCTATCCTAAATAAGCGAGTACCAATCGGAATGTGGATAT
ATTTTCTGGTAACACAAGAGCCA

Homology of Contig U35_17630 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07540.1	336	4e-149	protein\|SHOOT1 protein, putative, expressed
Brachypodium v1_2	Bradi1g56130.1	335	2e-158
Arabidopsis v10	AT1G55480.1	335	3e-123	\| Symbols: ZKT \| protein containing PDZ domain, a K-box domain, and a TPR region \| chr1:20713822-20715351 FORWARD LENGTH=335