barSeed - Barley Seed Development Database

Probe CUST_3162_PI390587928

Source Contig U35_46904

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3162_PI390587928	Hv_44K_v2	CTCAAAAAACTCAAGGATCCAGTCATTGAGAAAGATACAGAATTGAGGAAGTGGTGGGAC	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49802.2	2653	2e-24	2141 - 2200	100	60 / 60	plus	ABC47564
MLOC	MLOC_49802.1	2969	2e-24	2331 - 2390	100	60 / 60	plus	ABC47564
JLOC1	JLOC1_31856.1	2789	8e-25	2157 - 2216	100	60 / 60	plus
Harvest21	ABC47565	630	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_46904	630	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_46904 630 Hv_44K_v2
TGCACCAGGGGTAAACACCCCCGGTCTCTGCACGGACCTGGAGCCCGAAGGTTAGTGATA
TCAGATAGCGACCAATTGATGGGGCACACAGGGCATCTCCTTGCTACTCCAACTGAGCTG
GTGGTCGAAAGTTGCAAGGTGCCGCTGGGCGACTGGAGTTTGCTTCACCACCTACCAGGC
CTAAGTAGGTTAAAAATAAAGGAATGCCACCATTTAACTATCGGCTCACCAGGGATCAGC
AGGATCCCATCCACCCTCCAGTCCATCTGTTTCTCCTGGTGTGACAACTTAAGCTCACTT
CCAGAATACTTGGGTGAGCTCACAGGTCTCCATGAATTGAAGATTAAGCACTGTAAAAAG
CTCACTTCTTTGCCAGACGGAATGAAGCTCCTCACATCCCTTCAGACCTTGCATCTTATT
GAATGTGAGAGCATGGGAAAACTCCCTGAATGGTTTGGAAGCCTAACCTCTCTTGAGAAG
CTGACCATCGACAAATGCCCGGGCATTAAAACTTTGCCTGGTATAGACAAACTCAAAAAA
CTCAAGGATCCAGTCATTGAGAAAGATACAGAATTGAGGAAGTGGTGGGACGGAAAGGCC
AAGATGCTCGCGCCCAGCCAGCCAAAAACT

Homology of Contig U35_46904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None