barSeed - Barley Seed Development Database

Probe CUST_31622_PI390587928

Source Contig U35_17636

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31622_PI390587928	Hv_44K_v2	ATTCACTGATGTGTATAGACATTTCTGGACATTGGTACCTCATCGTCAGGTTGGGGGCTT	683	GeneList: salmon MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.012	2.795	1.049	0.825	0.368	0.449
Raw	108.671	123.531	39.796	51.043	6.493	10.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9268.1	1977	8e-25	653 - 712	100	60 / 60	plus
Harvest21	ABC08367	787	3e-25	684 - 743	100	60 / 60	plus	ABC08367
Harvest35	U35_17636	787	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_17636 787 Hv_44K_v2
GTCCCCCGGGCCTGCAGGAAATCGGCACGAGGGGGCGCCCGGCGTCGTCTACGCCGCCGC
CACCACGGAGAAGAGCATCTACGACTTCACCGTGAAGGATATTGATGGAAAAAATGTTTC
TCTTAGCAAGTTCAAGGGAAAAGCACTGTTGATTGTTAATGTTGCTTCTCAATGTGGGCT
TACAACAGCAAATTACACTGAGCTATCTCATCTTTACGAGAAGTACAAGACTCAAGGGTT
TGAGATTCTAGCGTTTCCATGCAATCAATTTGGTTTTCAAGAACCTGGATCAAATACACA
GATAAAGCAATTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGATAAGGTTGA
TGTCAATGGACCATTTACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATT
TTTGGGTGATATAGTGAAGTGGAACTTTGAGAAGTTCCTAGTGGACAAAAATGGCAAAGT
TGTGGAGAGATACCCACCAACAACTTCACCATTCCAAATTGAGAAGGACATCCAGAAACT
CGTCGCGGCATAAGTACTTTTGAGTCTGGCTTCAGTTAAGCACTCGTGTATATATTGCCC
TTTTCCCCGGAAACTAGAGTTTTTACTTGTGATTATTATGACTCTTTTCTTCCGCGATAT
ATGTTTTCTGTTTCTGTAAAATAATTCACTGATGTGTATAGACATTTCTGGACATTGGTA
CCTCATCGTCAGGTTGGGGGCTTGGAGAAGCGAGCGACAATACTGACCGTTGAAAAAAAA
AAAAAAA

Homology of Contig U35_17636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08670.1	235	7e-109	protein\|glutathione peroxidase, putative, expressed
Brachypodium v1_2	Bradi1g47140.1	227	4e-114
Arabidopsis v10	AT2G25080.1	236	7e-102	\| Symbols: ATGPX1, GPX1 \| glutathione peroxidase 1 \| chr2:10668134-10669828 FORWARD LENGTH=236