barSeed - Barley Seed Development Database

Probe CUST_31621_PI390587928

Source Contig U35_17637

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31621_PI390587928	Hv_44K_v2	TTTTGTCGAAATGCTGCTCTTGTGGTTATCATTCGTTAAATAAATTCACCTTCTGCCGGA	1605	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358499	1687	2e-24	1626 - 1685	100	60 / 60	plus	ABC05940 ABC07447 ABC37713
JLOC1	JLOC1_4811.1	898	8e-25	734 - 793	100	60 / 60	plus
Harvest21	ABC07447	1663	4e-24	1606 - 1663	100	58 / 58	plus	ABC07447
Harvest35	U35_17637	1697	3e-25	1606 - 1665	100	60 / 60	plus

Contig Sequence (1697 bp)

>U35_17637 1697 Hv_44K_v2
CGCATCTCCTCTTCCTCTCTAGTCCCAACCACCTAACCGCCCCCAAATCTCCAAACCCTA
GCTCTACCCCACCCCCACCACGCAGCCGGCCGCCATGGCCGAGACCGTCGACGACAAGGT
TGCGTACTTCCAGGCCGTCACAGGCATCCCCGACCCTGACCTCTGCTCCCAGATTCTCGC
CGCCAACAACTGGGACCTCCAGCTCGCCGTCTCCTCCATGACCGGCGACCCCTCCTCGCC
CGAGCCGTCCACTTACGCCCCGCCGCCCCCGCCTCCGCTGGAGTCCGATTCTATCACCTA
TCAGCCCCCTGCGCCGGCCCCTCAGCAGCAGCAGCAGCAGCAGCAGCCGGGGATCGCGTG
GAGGCTAGTGACCCTCCCTTTCTACGTGGTCTCCGGTGGGGTCGGCCTCGTCACCGGTTC
CATCCGCCTCGGTGTCTGGGTCGCGAGCGGCGTGCTGTCCCGATCCCTCTCCCTCCTCGG
CCTCGCGCAGGGCGGCGCTGACCGCTTGCTTGAGCTGCCCCCGTCCGCCGCGGAGGCGGT
TGGCTTCCTGGCCGAGTTCGAGCACGAGTTTGGGGCTGGCCGTGGCCCGCGCTTCGTCGC
TGAGGGATTTTCTGACGCGCTGCAGCGTGCGCAGCGTGAGTACAAGCTTCTCTTCGTGTA
CCTCCACTCCCCTGACCACCCGGACACCCCGGCATTCTGCGGTGGCTGCCTCTGCTCCGA
GCCGGTGGCCGCCTTCATAGATGAGAACTTCGTTGCATGGGGTGGTAGCATCAGGAGGAC
TGAAGGGTTCAAGATGAGCAACAGTCTGAATGCATCACGCTTCCCCTTTTGTGCGCTAGT
CATGGCATCTACGAACCAGAGAATCGTGCTGTTGCAGCAGGTTGAGGGGCCCAAATCACC
TGAAGAGATGATAACAATTCTTCAAAGAGTTGTTGAAGAGTGCACTGCGTCCCTTGTTGC
TGCCAGGATTGAAGCTGAAGAAAGACTAAACAATCAACGTTTGCGTGAGGAACAAGATGC
TGCTTACAGAGCTGCCCTTGAAGCTGATCAGGCCAGGGAACGCCAAAGGAGAGAGGAACA
AGAAATACTTGAAAGAGAGGCTGCGGAGGCTGAGAGGAAGCGTATAGAAGACGAGGAAGC
ACAAGCCAGGGCAGTCCAAGAAGCAGCTGAAAAGGAAGCCGCTCTTGCAAGGAGACGTCA
AGAGAAGGCAATGGCTCTTGGCGCTGAGCCTGAGAAAGGGCCTGACGTTACTCGGGTTCT
TATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCCACAGTTCCGCCACCATTAC
CTCCATATATGACTATGTTGATTCTTTGGATTGCTTGAAAGCGGAGAAGTACAGCCTAGT
TTCTAATTTTCCGCGGGTAACATACGGTCCCGAAAAGAACTCCCAAACGCTCGTGGAAGC
AGGTTTGCACCCACAAGCAAGCCTATTTATCGAGATAGAACAATGAATGTCCCCAATTTT
CCAAGTTATATGTACTGAAACTTGCAAGTATAGGTGCTCCTTTTTTACTCTATTTGACAA
ACAGTGGGGAACTTCCAGCTGTATGGCAATATACTTAGACTTGACTTTTGTCGAAATGCT
GCTCTTGTGGTTATCATTCGTTAAATAAATTCACCTTCTGCCGGATCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_17637 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37630.1	467	0.0	protein\|UBX domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g31370.1	463	0.0
Arabidopsis v10	AT4G10790.1	480	5e-117	UBX domain-containing protein \| chr4:6640752-6643035 REVERSE LENGTH=480