barSeed - Barley Seed Development Database

Probe CUST_31610_PI390587928

Source Contig U35_16087

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31610_PI390587928	Hv_44K_v2	CTTGTTTGGTGTCGTGGCTATGATCGAATTGTGTTCTTGTTAATATATTTGTGTCCAGTA	1461	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.793	2.281	1.157	0.862	0.344	0.463
Raw	979.057	1955.240	865.664	1071.174	142.337	210.457

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359198	1335	2e-24	1234 - 1293	100	60 / 60	plus	ABC04531
MLOC	MLOC_10155.2	1431	2e-24	1308 - 1367	100	60 / 60	plus	ABC04531
MLOC	MLOC_10155.1	2269	2e-24	51 - 110	100	60 / 60	minus	ABC04531
JLOC1	JLOC1_6622.1	1700	8e-25	1540 - 1599	100	60 / 60	plus
Harvest21	ABC04531	1591	3e-25	1462 - 1521	100	60 / 60	plus	ABC04531
Harvest35	U35_16087	1603	3e-25	1462 - 1521	100	60 / 60	plus

Contig Sequence (1603 bp)

>U35_16087 1603 Hv_44K_v2
TACCAGAGACCACACACACAAATATTCTTCCCGTGCAAGAAGAAGGAATTCAGGGAGGGA
AGCAATCCAGCAAGGAAACCAGCAGAGTCCCGGGCCGGCCGGATTCACTGCTCCAGAGTC
CAGCCAGAGTTTGCGTTCCGGCCGGTAGGCAGAGGCCGCCTACTCCCCAACCAAACCGCT
GCTACCGCTCCCCGCGGCCATAAATAACGGACCTCCCCTGCGCCCGCTCGCGCACGCCGT
CCTCCTCCCTCCCTCCCTCCCTCCTTCCCGTCGCGCATCAATCAATCAACACAACCAATC
TCGCCATCGACTAGTCCGTCAAGCTTCGGGAGCCGACGCAAGAACCAGATGGGCATCCTG
TCCCTCATCACCGGCAAGCCGGGCGCCAGCGGGTTCGGGTCGGGCTCCACGGCGGAGCAG
GTCACCGAGGGCATCTGCGCCGCCGCCCTCACCGTCATCGTCACAGGAGGATCTAGTGGC
ATTGGTTTTGAGACCTCGAGAGTCTTTGCCCTGAGAGGAGCCCATGTCATCATCGCTGCG
AGAAACACAGAGGCTGCATCAGAGGCAAAGAAACGCATCATGAAGATACACCCAGTAGCC
CGCATCGATGTTCTGAAGCTTGACCTTAGCTCCCTCAAGTCTGTCAGGGCCTTCGCTGAC
CAGTTCAACTCCATGAATCTTCCTCTAAACATCTTGATAAATAATGCAGGTGTTATGTTC
TGTCCTTTCCAACTGTCTGAAGATGAAGTTGAGATGCAGTTTGCCACAAATCATCTTGGT
CACTTCCTACTGACCAACCTTCTCCTTGAGAACATGAAAACTACTGCTAAGTCTACCGGT
ATTGAGGGTCGCATTGTGAACTTGTCATCAGTTGCCCACCTCCATACATATCCAAAGGGG
ATTCAGTTTGATCAGCTCAATGACAAGAAAACATACAATGATAAAATGGCCTATGGACAA
TCTAAGCTTGCAAACATACTGCACGCAAAAGAGCTCTCTAGGCGGCTCAAGGAGGAAGGA
GCTAACATCACAGTTAATTGCGTTCATCCTGGATTGATCATGACCAATTTGATGAGGCAT
TCCTTTGCTCTCATGAAGGTAATTCAAGTCGTCACTTACGTGTTCTGGAAGAATGTACCC
CAGGGAGCAGCCACTACTTGTTACGTCGGGCTCAACCCTCAGCTGAAGGGGGTGACAGGC
AAATACTTTGCAGACTGCAACGAGGAGAGGACGAGCGCGCACGCGAAGAGCGACGCCTTG
GCGAAGCAGCTCTGGGAATTCAGCGAGGAGCTCATCAGATCCGCAAAATAAGTGCTCGGA
AAGGCGTCTTTTGGGATGCTGTCTGGTACAAAGGGTTGGGTAGTGTGTAGCAACAGTACA
AGCAGTGGCTGCAAGTAGGAAGGAAGCCTGTCACTTGGTGAAGTGAACCAATATTGTTCA
CGAATAAATTTTATTTTCGTGCTTGTTTGGTGTCGTGGCTATGATCGAATTGTGTTCTTG
TTAATATATTTGTGTCCAGTATAAAAAAAAAAAAATTGTCTCGGTTTCGGATTGGATTAA
TGAATCTAGTTAATCATCTCGCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05840.1	322	4e-169	protein\|oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
Brachypodium v1_2	Bradi2g03400.2	321	4e-179
Arabidopsis v10	AT5G02540.1	331	8e-125	NAD(P)-binding Rossmann-fold superfamily protein \| chr5:568609-570720 FORWARD LENGTH=331