barSeed - Barley Seed Development Database

Probe CUST_31609_PI390587928

Source Contig U35_42350

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31609_PI390587928	Hv_44K_v2	GAATCCATGGTTAGTTCTCTGTATGTTTACATGGTTGATCCATACTTTTTGAGGAATCAA	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19825.2	2789	2e-24	1399 - 1458	100	60 / 60	minus	ABC32836
JLOC1	JLOC1_13738.2	2741	8e-25	1284 - 1343	100	60 / 60	plus
Harvest21	ABC37976	653	3e-25	589 - 648	100	60 / 60	plus
Harvest35	U35_42350	653	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_42350 653 Hv_44K_v2
GGGGTGCTCGGCTACCTGGACCAAGAGCTCACAAGCTGCAGATTGGTGACAGCGTCATCG
GGTCAGACACAATGGTGAGCGCAAGCACTGTGGTTCCAAGCGTCAAGATATTGGCGTTAA
CTGTGAATTTTAGTGTCTTTGGGGAGGTCAAGATGCTGGCCAGCTTCCTCAGATGCTTTC
CCAATGTTGACACGCTGCACATTGAGTCTGCACTGCATGATCCATCTGTAACTGCCGATG
AACCCAGTGGGGAGCATCATGCCAAGTTCTGGCAGAAGATCAGTCCGATTTGTTGCTTGA
GATCACATATCAAGAAGATGGTTATTCTTGATTTCCGAGGGGGTCAAAATGAATTTCAGT
TCCTCAAGTTCGTTTCCATGAATGCCGATGAGCTGCAGTCCTTACTGCTTGTGCCGCACG
AAGGAATTTTGTCTTCAGCTGACAAGGTGAATGAGATAAAAGACGAATTTCAGTCTCTAC
AGTTTCCAACAGGCATCTCTGCAGTGCTACAGGTGTCACCTAAAGCAGGCACTGGTTTGC
GCTTGGAGAAAGCATCCAATCTTACAATCGATGACCCTTTTGAGTGCTGAATCCATGGTT
AGTTCTCTGTATGTTTACATGGTTGATCCATACTTTTTGAGGAATCAATGATT

Homology of Contig U35_42350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None