barSeed - Barley Seed Development Database

Probe CUST_315_PI415269222

Source Contig TA41386_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_315_PI415269222	Hv_44K_v2	ACTTTGGTGACTACCGAGTGGGCAATGTATGAGCTTGCTAAAAACCCAGAAAAGCAGGAT	246	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.118	0.253	1.115	1.775	1.037	1.269
Raw	94.727	315.040	1215.455	3047.002	624.841	827.252

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369327	1862	2e-24	1141 - 1200	100	60 / 60	plus	ABC15315
MLOC	MLOC_17178.2	1893	2e-24	1244 - 1303	100	60 / 60	plus	ABC15315
MLOC	MLOC_17178.1	1814	2e-24	1195 - 1254	100	60 / 60	plus	ABC15315
JLOC1	JLOC1_11860.1	2022	8e-25	1152 - 1211	100	60 / 60	plus
Harvest21	ABC15315	1821	3e-25	1082 - 1141	100	60 / 60	plus	ABC15315
Harvest35	U35_21965	1821	3e-25	1082 - 1141	100	60 / 60	plus

Contig Sequence (709 bp)

>TA41386_4513 709 Hv_44K_v2
GTTGATTGGAGGGATTTCTTCCCATACCTCAGCTGGATCCCAAACAAAAGCTTCGAAACA
AGAGTTCATACCGCAGAATCCAGGCGAACCGCGGTGATGCAAGCCTTGATCCGTCAACAG
AAAAAGAGAATTGCGAATGGCGAGGCCAGGGCATCCTATCTGGACTTCTTGCTGGCAGAG
AAGGCACTGACAGACGAACAATTGATGATGCTGGTGTGGGAGGCAGTCATCGAGGCTGCG
GATACTACTTTGGTGACTACCGAGTGGGCAATGTATGAGCTTGCTAAAAACCCAGAAAAG
CAGGATCGGCTCTACCAGGAGATCCGGGAGGTGTGCGGTGACGAGACGGTCACTGAGGAT
CATGTGCCACGGCTGCCTTACCTCAGCGCCGTGTTCCATGAGACGCTCAGGCTCCATTCT
CCTGTCCCATTGGTGCCTCCAAGGTTCGTCCATGAGACCACCAAACTGGCCGGCTACGAC
GTCCCAGCCGGCACTGAGATAGTCATCAACCTGTACGGGTGTAACATGAACAAGAAGGAC
TGGGAGGAGCCGGAGGAGTGGAGGCCCGAGAGGTTCATGGACGGGAGGTTCGAGGCCGCG
GACATGTACAAGACCATGGCGTTCGGCGCCGGGAGGAGGTCCTGCGCCGGGAGCCTNCAA
GCGACGAGCATCTNCTGCGCTGCCATTGCGCGCTTCGTGCANGACTTTC

Homology of Contig TA41386_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37364.3	409	7e-137	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi1g37547.1	499	9e-140
Arabidopsis v10	AT5G25900.1	509	2e-88	\| Symbols: GA3, CYP701A3, ATKO1 \| GA requiring 3 \| chr5:9036073-9038278 FORWARD LENGTH=509