barSeed - Barley Seed Development Database

Probe CUST_3158_PI390587928

Source Contig U35_46906

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3158_PI390587928	Hv_44K_v2	CGAGTTTTTAGAGAACCGGTTTAATCTGGACTTGGGGGAGAAACAATCAGGAGAGAAGGT	563	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51044.1	11237	2e-24	9767 - 9826	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.4	10699	2e-24	8638 - 8697	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.3	11664	2e-24	9505 - 9564	100	60 / 60	plus	ABC11862
JLOC1	JLOC1_32572.3	11796	8e-25	9678 - 9737	100	60 / 60	plus
JLOC1	JLOC1_32572.1	11838	8e-25	9720 - 9779	100	60 / 60	plus
Harvest21	ABC47571	640	3e-25	564 - 623	100	60 / 60	plus
Harvest35	U35_46906	640	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_46906 640 Hv_44K_v2
GCATTGAGTACACGGCAATATCAGTCTTCCTCAAAGCAGGATAGCGGTGAGGGGAGCCGC
CTTTTCAAAGTTATGGCAAAATCTTTTTCCAAAAGATGGCAAAGTGGAGAAATTACCAAC
TTCCAGTATCTCATGCATCTAAATACACTTGCTGGTCGTGGTTATAGCGACCTTACACAG
TACCCAGTATTTCCATGGGTTCTTGCAGATTACGAAAGCGATAACTTAGATCTGAGTAAC
CCACGGAGCTTCCGTAAGCTTGATAAACCAATGGGATGTCAAACAGAGGGAGGAGAAGAG
GAATTCCGCAAGAGATATGATAGCTGGGATGACCCTGATGTACCAAAGTTCCATTATGGT
TCTCATTATTCAAGTGCTGGGATTGTTCTTTTCTATCTTCTAAGGCTGCCTCCATTCAGC
ATGGAAAACCAGAAACTGCAGGGTGGACAATTCGACCATGCAGACAGGTTGTTCAATAGT
GTGAAAGATACATGGACAAGCGCTGCTGGTAAGAGCAACACATCAGATGTGAAAGAGCTC
ATTCCTGAGTTCTATTATCTGCCCGAGTTTTTAGAGAACCGGTTTAATCTGGACTTGGGG
GAGAAACAATCAGGAGAGAAGGTCGGTGATGTTGTTTTGC

Homology of Contig U35_46906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53280.1	3583	1e-131	protein\|WD domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g08917.1	3567	2e-131
Arabidopsis v10	AT1G03060.1	3601	2e-120	\| Symbols: SPI \| Beige/BEACH domain ;WD domain, G-beta repeat protein \| chr1:712971-726891 REVERSE LENGTH=3601