barSeed - Barley Seed Development Database

Probe CUST_31586_PI390587928

Source Contig U35_30381

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31586_PI390587928	Hv_44K_v2	GCTCCAGCATTCATTGCTCTCTGCAATTCTCGGACACATATATTGCACATCTAAATGACT	569	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.117	1.567	1.126	0.668	0.168	0.178
Raw	476.082	542.186	343.428	315.375	28.306	31.827

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41813.1	872	8e-25	710 - 769	100	60 / 60	plus
Harvest21	ABC30283	632	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_30381	632	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_30381 632 Hv_44K_v2
GTCGCCATGTCTTCCAGCGAGGTCGCCTGCACCCTTGCCGCCCTCATCCTCCACGATGAC
GGGATCCCCATCACTTCTGAGAAGATCGCGACGGTGGTGAAGGCTGCCGGGATCAAGGTT
GAGGCCTACTGGCCAGCGCTCTTCGCCAAGCTCCTGGAGAAGAGGAGCGTCGATGACCTC
ATCCTCTCCGTCGGATCTGGTGGAGGTGGTGCTCCAGCTGCTGCTGCTGCCCCGGCTGCT
GGTGGTGCTGCTCCCGCTGAAGAGAAGAAAGAAGAAAAGAAGGAGGAAGCTAAGGAAGAG
AGCGATGATGACATGGGCTTCAGCTTGTTTGACTAAGCAGTGCAATTCCAGTTCTCCTTT
GGAATCTGCTATCCTAAAGACCCTTCTTATGTGCTTTTAGGTCGAATTTTGAAGATTTAA
TATGTTATTCTGTTTGGGACCTAAGTATCTGTGCAATGTTTACCGCAAACCTCCTTGAGA
TGGTATTGTTAGAATTAAAATGTGCCTTCAGCTTTCTTGAGTTTGGTGCAAGGGTTAATA
CCCTGTTTTCATTTCTACTCGTTGTGTTGGCTCCAGCATTCATTGCTCTCTGCAATTCTC
GGACACATATATTGCACATCTAAATGACTAAA

Homology of Contig U35_30381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None