barSeed - Barley Seed Development Database

Probe CUST_3156_PI390587928

Source Contig U35_10979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3156_PI390587928	Hv_44K_v2	CTAAAATTGCAGAATTTGATGAATCGAAGGACACAGCAGCTTCACCCATGCCCCAAGATT	553	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.102	1.377	1.257	0.678	0.407	0.389
Raw	271.015	220.844	219.479	162.773	39.211	40.959

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56805.1	3408	2e-24	1707 - 1766	100	60 / 60	plus	ABC13411
JLOC1	JLOC1_36775.3	3014	8e-25	1284 - 1343	100	60 / 60	plus
JLOC1	JLOC1_36775.2	3313	8e-25	1583 - 1642	100	60 / 60	plus
JLOC1	JLOC1_36775.1	3329	8e-25	1599 - 1658	100	60 / 60	plus
Harvest21	ABC24232	641	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_10979	641	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_10979 641 Hv_44K_v2
GCATCTTCTAGCTACAGTAGTCGTTCACAGCAGCCAAGTGGCTCGCAGAAAGCTGTTCCA
AATAAAGAGTGGAAGCCAAAACCAACGAACAAACCCGCCCAAGCTGAAGATGTTACCCGT
GATGATGTAGCTGTTACTGTGGAGGTTGTTCCACAGTCAGTTCCTGCATCAACTTCCATT
AATAAGGAAGATATCTCTTCGGGATTGGACAAAAGACTCGGTGATATGCAGTTATTCGAC
AAGCAGCATGTCATTATTCCGGATCATCTTCAGGTCACGGAGTCGGAAAAATACGGACTC
AGTTTTGGCAGTTTTGGCACCAGTTTTGAACAAGCTCCGAGCTTTCCAAACGACCATGGG
AGTGAGAAGAGCTCTGTATTGCCGGAATATGAATCATCACAAGATCTGGAGGAAGTTGCG
GAAGAACCTCCTTCTAGTCATCAGAGTGCATCCTCCACTGTTGAAGCGGCAGCTGAATCT
GGTCAGCAGCAGCTGACTGCTGAAATGACTGATAATATCTCACCTCAAGAGGCGGATAAT
TTATCCAGTACTCCTAAAATTGCAGAATTTGATGAATCGAAGGACACAGCAGCTTCACCC
ATGCCCCAAGATTCTGTCCCGAATACGTACTCAACATTTGC

Homology of Contig U35_10979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08670.1	793	8e-65	protein\|protein of unknown function DUF1296 domain containing protein, expressed
Brachypodium v1_2	Bradi4g08887.1	818	2e-74
Arabidopsis v10	None