barSeed - Barley Seed Development Database

Probe CUST_31566_PI390587928

Source Contig U35_16099

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31566_PI390587928	Hv_44K_v2	TTTGTCGGAGTAGTAGGTAGTAGAGTACATGCACGTACTGATGTTGTACAGCCAGAGGTT	1095	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.433	4.748	1.202	0.765	0.191	0.372
Raw	587.525	859.982	181.814	195.074	15.197	34.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57434.3	1372	2e-24	83 - 142	100	60 / 60	minus	ABC08642
MLOC	MLOC_57434.1	1338	2e-24	130 - 189	100	60 / 60	minus	ABC08642
MLOC	MLOC_57434.2	1253	2e-24	110 - 169	100	60 / 60	minus	ABC08642
JLOC1	JLOC1_37227.1	1341	8e-25	1010 - 1069	100	60 / 60	plus
Harvest21	ABC08642	1258	3e-25	1096 - 1155	100	60 / 60	plus	ABC08642
Harvest35	U35_16101	848	3e-25	682 - 741	100	60 / 60	plus
Harvest35	U35_16099	1216	3e-25	1096 - 1155	100	60 / 60	plus

Contig Sequence (1216 bp)

>U35_16099 1216 Hv_44K_v2
CACACCTCCACCTCCACCACACGCCACGCTACCTGGCCCAGCTCCGCCTCCACCATCCGC
CCGAGCAGGCTCACGCACTTCTCGTTTCCCGGCCGGCCGTCCATGGAGATCATCGACGCA
GAGCTGCGGCTCGGCCCGCCCGGCAGCGGCGGCGGAGACGGGGGGTTCGGCGCGTCGTCG
GCGGCGCAGAAGAAGCGGCCGTCGTCGACCGTGGCTGCGGCGGCCAGCGAGGCCTCCGGG
ACCGACGACCACGACGCCGCACCGGCTTCCAAGGTTCAGGTTGTTGGGTGGCCGCCGGTG
GGCGCGTACCGGAAGAGCACGTTCCAGTCGGCGGCGGCGAAGGAGAGCAAAGGCGCCGGC
GAGGCGGGGAGCAAGAGGTCCGCCGGAGGAGGAGGGGGGCTGTACGTGAAGGTGAGCATG
GACGGGGCGCCGTACCTTCGGAAGGTGGACCTGAGGACGTACGGCGGGTACCGGGAGCTG
CGCGCGGCGCTGGACGCGCTCTTCGGCTGCTTCTCCTCCTGCTCCTCCCCGGACAACGCC
CCCTTCGCCATGGCCTACGAGGACAAGGACGGCGACCTCATGCTCGCCGGCGACGTCCCC
TGGGAGTAAGCACACCAACACGTACCCATCTTAATTAATTTGCATATACCAACTGACCAA
AAATGAGTCTAACTAACGGGTGATTTCTTCGTTTGGTTTTGCAGCATGTTCATCTCGTCC
TGCAAGAGGCTGAGGATAATGAAAAGCTCGGAAGCACGATGATGGCGACGAAAAGGACAC
GATCGTGCACACATACATAAATGAAGCGATCCGGAGACGATGGAAACTTGCCGTACGTGG
CTCATGATCAGAGACGGACACACAGACGCATGCATGATCGGGCCGGCCATGGGTGAACGG
CGACGGAGGCCGTGACCCGTGAGCTAGCCGGTTCACGCACGCGCGCTCTGTGAAGTGTAC
TGATCTGCATCCACCCGCTCGGTACGAACGCGAGGCTGGGTCCAGGGACTCACAGGCGCG
CGAGCTCCGGCGGCCAGTCCGGCCGGATCGGCGCGCAGGTAGCATGCAGTAGCGGTAGCA
GACTAGCAGTACTGTTTTGTCGGAGTAGTAGGTAGTAGAGTACATGCACGTACTGATGTT
GTACAGCCAGAGGTTCAGGCAGCCATGTAAGAAAGGACCGGGACTTGGGTGTCCGTGTAG
TAGATAAGTTCTCTGC

Homology of Contig U35_16099 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None